| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4126 |
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| Symbol | ligB |
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| ID | 6872970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 3970857 |
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| End bp | 3972542 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642787072 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_002217699 |
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| Protein GI | 198244266 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGATTAT GGAAAAGTAT GGCGTGGGGA ATTTTATTGT GGCATTCGCA GAGTGGGGCG
CTTTGCCCGG CCTGGCCGCC AGCAAGGGCC GCTGAAGAAA TCACCCGTTT ACAGCAACAG
CTCGCTGACT GGAATGACAT CTACTGGAAA CAAGGTGTTA GCGCGGTTGA CGATAGTGTG
TACGACCAGC TCAGCGCAAG GCTGGTTCAG TGGCAACGCT GTGTTGGTCA GGATGTTTCA
TCTACTCCGG TTTCACCGCC GTTAAACGGT ACAACAATGC ACCCTGTTGC GCACACGGGC
GTACGTAAAC TCGCGGACCG ACAGGCGGTA GAACAGTGGA TGCGCGGGCG CAGCGAGCTT
TGGGTACAGC CAAAAGTGGA TGGCGTAGCG GTAACACTGG TTTATCAAAA CGGTAAACTG
ACCAGGGCCA TTAGCCGGGG TAACGGACTA CAAGGCGAGG ACTGGACGCC AAAAATTCGC
CTGATCCCCT CTATACCGCA GACAACACAA GGCGCGCTAG CTAACGCGGT GTTGCAGGGC
GAAATCTTTC TACAGCGCGA GGGGCATATC CAGCAACGGA TGGGCGGGAT GAATGCGCGC
TCGAAAGCCG CAGGAATGTT AATGCGCCAG GATAACGCCT CCGCGCTAAA TTCGTTGGGT
ATTTTTATTT GGGCGTGGCC GGACGGTCCG GCAAATATGC CCGAAAGATT AAGCCAACTT
GCTAAGGCTG GATTCAGTCT GACGAAGAAA TATTCTCTGG CGGTAAAAGA TGCCAGCGAG
GTCGAGCGGG CGCGCCAGTC ATGGCTGACG TCAGCATTAC CCTTTGTGAC GGATGGCGTA
GTGATACGCA TGGCTAAAGA ACCCGCGTCA CAATACTGGC GACCCGGGCA GGGCGACTGG
CTGGCAGCAT GGAAATATCC GCCAGTAGCG CAGGTCGCGC AAGTGAGCGC TATTCAGTTC
TCGGTGGGGA AAAGCGGCAA AATTACCGTA GTAGCGTCGC TTGTCCCCGT TATATTGGAT
GATAAGCGGG TTCAGCGGGT CAATATCGGT TCTGTGAAGC GTTGGGAAGC GTGGGATATC
GCGCCGGGCG ATCAGATCCT GGTGAGTCTG GCGGGGCAAG GCATTCCCCG GCTTGATGAG
GTCGTCTGGC GGAGTCGTGA GCGGAGTAAG CCTGTACCGC CTGATAGCCA TTTCAACTCG
CTGACCTGCT TTTACGCGTC GGAAACGTGT CAGGAACAGT TTATCTCCAG GCTGGTATGG
CTGGGGTCAC GGTCGGCGTT GGGTCTGGAC GGAATGGGCG AAGCCAGCTG GCGGGCCTTG
CATCAGACGC ATCGCTTTGA GCATATCTTC TCCTGGCTTG CCCTGACGTC AGCACAAATA
GCCAACACGC CAGGCTTTGC TAAAGGAAAA AGCGAGCAGA TATGGCGGCA ATTTAACCTG
GCGCGCCGGC AGCCGTTTAC CCGCTGGATC ATGGCGATGG ATATCCCCTT AACGCAGGCC
GCATTACAGG CCAGCGGCGA TCGCTCATGG GAGCAGTTAT TAATGCGAAC AGAGCAACAC
TGGCGGCAGT TGCCAGCGAC GGGCGAGCGC CGTGCCGGGA GAGTTATCGA CTGGCGGGAT
AATCCGCAGA TCAAAACGCT GAGCAGATGG CTGGCTGCTC AGCATATTCC CGGATTTGGG
TCTTAG
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| Protein sequence | MRLWKSMAWG ILLWHSQSGA LCPAWPPARA AEEITRLQQQ LADWNDIYWK QGVSAVDDSV
YDQLSARLVQ WQRCVGQDVS STPVSPPLNG TTMHPVAHTG VRKLADRQAV EQWMRGRSEL
WVQPKVDGVA VTLVYQNGKL TRAISRGNGL QGEDWTPKIR LIPSIPQTTQ GALANAVLQG
EIFLQREGHI QQRMGGMNAR SKAAGMLMRQ DNASALNSLG IFIWAWPDGP ANMPERLSQL
AKAGFSLTKK YSLAVKDASE VERARQSWLT SALPFVTDGV VIRMAKEPAS QYWRPGQGDW
LAAWKYPPVA QVAQVSAIQF SVGKSGKITV VASLVPVILD DKRVQRVNIG SVKRWEAWDI
APGDQILVSL AGQGIPRLDE VVWRSRERSK PVPPDSHFNS LTCFYASETC QEQFISRLVW
LGSRSALGLD GMGEASWRAL HQTHRFEHIF SWLALTSAQI ANTPGFAKGK SEQIWRQFNL
ARRQPFTRWI MAMDIPLTQA ALQASGDRSW EQLLMRTEQH WRQLPATGER RAGRVIDWRD
NPQIKTLSRW LAAQHIPGFG S
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