Gene SeD_A4056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4056 
Symbol 
ID6872932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3898456 
End bp3898929 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content47% 
IMG OID642787005 
Product2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM 
Protein accessionYP_002217632 
Protein GI198244111 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.202302 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value0.682013 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGGG TACTTGAGGG CATACTTGCG GTATTAATTG CCGTACTTTC CTGCATTGTA 
TTTATTAACG TTATTTTACG TTACGGTTTT GAGAGCAGTA TTTTGTCGGT AGATGAACTA
TCACGTTATC TATTTGTATG GCTGACGTTT ATTGGCGCCA TCGTTGCATT TATGGATAAC
GCTCACGTTC AGGTCACTTT TGTGGTGGAA AAACTTTCGC CAGCGAATCA GCGTCGACTC
TCGCTGCTGA CACATTCGCT GATTTTATTG TTATGCCTCG CATTAGGCTG GGGCAGCCTG
CAAAAAGCGT TGCAGGACTG GAGCGATCAC TCGCCAATCC TCGGTTTACC GATCGGCCTG
ATGTATATCG CCTGTCTGCC CACAAGCGTT GCCATCGCGT TAATCGAGCT GCGTCGGCTT
TATCACTTAA TAACGCGTAA CGATTCCTTT CAACAACCAC AGCAAGGAGC CTAA
 
Protein sequence
MKRVLEGILA VLIAVLSCIV FINVILRYGF ESSILSVDEL SRYLFVWLTF IGAIVAFMDN 
AHVQVTFVVE KLSPANQRRL SLLTHSLILL LCLALGWGSL QKALQDWSDH SPILGLPIGL
MYIACLPTSV AIALIELRRL YHLITRNDSF QQPQQGA