| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3966 |
|---|
| Symbol | |
|---|
| ID | 6874896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 3801386 |
|---|
| End bp | 3802858 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642786923 |
|---|
| Product | inner membrane transporter YhiP |
|---|
| Protein accession | YP_002217551 |
|---|
| Protein GI | 198246072 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.826151 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 85 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAA CTGCACCTAC GGGCTTGCTG CAGCAACCTC GTCCATTTTT CATGATCTTT
TTTGTAGAAT TATGGGAACG ATTTGGCTAT TACGGCGTCC AGGGCATCCT GGCGGTCTTT
TTCGTTAAAC AATTGGGTTT TTCTCAGGAA CAGGCCTTTA TTACCTTTGG CGCTTTTGCG
GCGCTGGTTT ATGGCCTGAT CTCCATCGGC GGCTATGTTG GCGACCATCT GTTAGGGACT
AAACGCACCC TGGTCCTGGG CGCGATTGTG CTGGCGATTG GCTATTTTAT GACCGGCATG
TCGTTATTAA ATCCCGATCT GATTTTTATC GCACTGGGTA CGATTGCCGT GGGCAACGGG
TTATTTAAAG CCAATCCCGC CAGCCTGCTC TCTAAATGCT ATCAGCCTAA AGATCCCCGG
CTGGATGGCG CTTTCACCCT GTTTTATATG TCGATTAACA TCGGTTCTTT GTTATCGCTA
TCGCTGGCGC CGGTGATTGC CGATAAATTT GGCTATACGG TGACCTATAA TCTGTGCGGC
GCTGGTTTAA TTGTTGCGCT TCTGGTGTAC TTCGCCTGCC GTGGCATGGT GAAAAATATC
GGTTCTGAAC CGGATCATAA ACCGCTACGT TTTCGCAATT TGCTGCTGGT ACTACTCGGC
ACCGTCGTCA TGATTTTCCT CTGCGCCTGG CTGATGCACA ACGTTAAGAT TGCCAATCTG
GTGCTCATCG TCCTTTCTAT CGTCGTCACT ATTTTCTTCT TTCGCGAAGC GTTTCGTCTG
GATAAAACCG GCCGCAATAA AATGTTCGTG GCGTTTATTC TGATGATTGA AGCCGTGCTG
TTTTACATTC TGTATGCGCA GATGCCTACC TCGCTGAACT TCTTTGCGAT TAATAACGTG
CATCATGAAA TTCTTGGATT CGCCATTAAC CCGGTGAGTT TTCAGGCGCT GAACCCATTC
TGGGTGGTCG TCGCCAGTCC GGTACTGGCA GCGATTTACA CCCGACTGGG TAGCAAAGGC
AAAGATCTGA CTATGCCGAT GAAGTTTACG CTCGGTATGT TCCTCTGCGC GCTGGGTTTT
CTGACCGCCG CCGCCGCCGG GATGTGGTTT GCCGATGCGC AAGGACTGAC GTCGCCGTGG
TTTATCGTGC TGGTGTATCT GTTCCAGAGT CTGGGCGAGT TGCTGATTAG CGCGCTGGGA
CTGGCAATGG TCGCCGCTCT GGTGCCGCAG CATCTGATGG GCTTTATTCT GGGAATGTGG
TTCCTGACCC AGGCCGCCGC CTTCCTGCTC GGCGGTTATG TGGCGACCTT CACTGCCGTA
CCGGAAAACA TCACCGATCC GTTACAGACG CTGCCCATTT ATACCGGCGT CTTTAGCAAA
ATTGGTCTGG TAACACTGGC GGTCACCGTG GTGATGGCCA TTATGGTGCC GTGGTTAAAC
CGGATGATTA ATACGCCAGG TACCGAACAG TAA
|
|---|
| Protein sequence | MNTTAPTGLL QQPRPFFMIF FVELWERFGY YGVQGILAVF FVKQLGFSQE QAFITFGAFA
ALVYGLISIG GYVGDHLLGT KRTLVLGAIV LAIGYFMTGM SLLNPDLIFI ALGTIAVGNG
LFKANPASLL SKCYQPKDPR LDGAFTLFYM SINIGSLLSL SLAPVIADKF GYTVTYNLCG
AGLIVALLVY FACRGMVKNI GSEPDHKPLR FRNLLLVLLG TVVMIFLCAW LMHNVKIANL
VLIVLSIVVT IFFFREAFRL DKTGRNKMFV AFILMIEAVL FYILYAQMPT SLNFFAINNV
HHEILGFAIN PVSFQALNPF WVVVASPVLA AIYTRLGSKG KDLTMPMKFT LGMFLCALGF
LTAAAAGMWF ADAQGLTSPW FIVLVYLFQS LGELLISALG LAMVAALVPQ HLMGFILGMW
FLTQAAAFLL GGYVATFTAV PENITDPLQT LPIYTGVFSK IGLVTLAVTV VMAIMVPWLN
RMINTPGTEQ
|
|---|
| |