Gene SeD_A3956 details

Gene Information

• Locus tag: SeD_A3956
• Symbol: nikR
• ID: 6871016
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
• Kingdom: Bacteria
• Replicon accession: NC_011205
• Strand: +
• Start bp: 3791084
• End bp: 3791521
• Gene Length: 438 bp
• Protein Length: 145 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 642786915
• Product: nickel responsive regulator
• Protein accession: YP_002217543
• Protein GI: 198242303
• COG category: [K] Transcription
• COG ID: [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
• TIGRFAM ID: [TIGR02793] nickel-responsive transcriptional regulator NikR

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 94
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGCCGAC GCGCCATACC AAAAGGTTTA AGTCAGATGC AACGTGTCAC CATCACCCTC 
GATGACGATT TACTGGAAAC GCTGGACAGC CTGAGCCAGC GACGCGGCTA TAACAATCGC 
TCCGAAGCGA TCCGTGATAT TTTGCGCGGC GCTCTGGCGC AGGAGGCCAC CCAGGAACAC 
GGTACACAGG GTTTCGCGGT ACTTTCATAT GTTTATGAAC ATGAGAAACG GGATTTAGCC 
AGCCGCATCG TCTCCACCCA GCATCATCAT CATGATTTAT CCGTCGCCAC GCTGCACGTC 
CATATCAACC ACGATGACTG TCTGGAGATC GCCGTTCTGA AGGGCGATAT GGGCGACGTA 
CAGCATTTTG CCGATGATGT TATCGCCCAG CGCGGCGTGC GCCACGGCCA CTTGCAGTGT 
TTGCCGAAAG AAGACTAA 

 

Protein sequence

MRRRAIPKGL SQMQRVTITL DDDLLETLDS LSQRRGYNNR SEAIRDILRG ALAQEATQEH 
GTQGFAVLSY VYEHEKRDLA SRIVSTQHHH HDLSVATLHV HINHDDCLEI AVLKGDMGDV 
QHFADDVIAQ RGVRHGHLQC LPKED