Gene SeD_A3880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3880 
SymbolgntX 
ID6875600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3708652 
End bp3709335 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content59% 
IMG OID642786842 
Productgluconate periplasmic binding protein 
Protein accessionYP_002217470 
Protein GI198244770 
COG category[R] General function prediction only 
COG ID[COG1040] Predicted amidophosphoribosyltransferases 
TIGRFAM ID[TIGR00201] comF family protein 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones77 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAACAG TACCGGGATT ATGCTGGCTA TGCCGAATGC CGCTGGCGTT AAGCCACTGG 
GGAATTTGTT CCGTATGCGC GCGCGCCGTT CGTCAGCGCG TCAGCCTGTG CCCGCAATGC
GGATTACCTG CCGCGCATCC TTCGCTCCCC TGCGGTCGCT GCCTGCAAAA ACCTCCGCCC
TGGCAGCGTC TGGTGAGCGT CAGTGACTAT ACGCCGCCCT TGAGTTTACT GGTGCATCAG
CTTAAATTTA CCCGCCGCAG CGAAATTGCC GCCGCTCTGG CGCGTCTACT GTTGCAGGAA
GTACTCATGG CGCGCCGCAG CACTGGCTTG CAGCTTCCCG ACAGAATCGT CAGCGTTCCG
CTCTGGTCGC GCCGACACTG GCGGCGGGGA TTTAACCAAA GCGATATGTT ATGCCAACCG
TTAGCGCGCT GGCTTGGCTG CGCGTGGGAC AGCCAGACCA TCACGCGGGT ACGGGCGACC
GCAACACAAC ATCATCTCAG CGCCAGGTTA CGTAAGCGCA ATTTGAAAAA CGCGTTTCGC
CTTGAATTGC CGGTACAGGG TCTCCATATG GTTATTGTGG ATGATGTCGT CACTACCGGA
AGTACCGTCG CGGAAATCGC GCAACTGCTT TTGCGCAACG GCGCAGCGAC TGTCCAGGTA
TGGTGCCTGT GTCGAACCTT GTAG
 
Protein sequence
MLTVPGLCWL CRMPLALSHW GICSVCARAV RQRVSLCPQC GLPAAHPSLP CGRCLQKPPP 
WQRLVSVSDY TPPLSLLVHQ LKFTRRSEIA AALARLLLQE VLMARRSTGL QLPDRIVSVP
LWSRRHWRRG FNQSDMLCQP LARWLGCAWD SQTITRVRAT ATQHHLSARL RKRNLKNAFR
LELPVQGLHM VIVDDVVTTG STVAEIAQLL LRNGAATVQV WCLCRTL