Gene SeD_A3871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3871 
SymbolompR 
ID6872298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3699550 
End bp3700269 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content56% 
IMG OID642786833 
Productosmolarity response regulator 
Protein accessionYP_002217461 
Protein GI198243980 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones76 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGAGA ATTATAAGAT TCTGGTGGTT GATGACGATA TGCGTCTGCG GGCGCTACTG 
GAACGTTATC TGACCGAGCA GGGCTTCCAG GTTCGAAGCG TCGCTAACGC TGAGCAGATG
GATCGTCTGC TGACCCGTGA ATCTTTCCAT CTCATGGTAC TGGATTTAAT GCTGCCAGGT
GAAGATGGTC TGTCGATTTG TCGTCGCCTG CGTAGTCAAA GTAATCCAAT GCCGATCATT
ATGGTCACGG CGAAGGGTGA AGAGGTTGAC CGTATCGTCG GGCTGGAAAT CGGCGCCGAT
GACTACATTC CTAAACCGTT TAACCCGCGC GAGCTGTTGG CGCGTATTCG CGCCGTGTTA
CGTCGTCAGG CAAACGAACT GCCCGGCGCG CCGTCGCAGG AAGAGGCCGT TATCGCGTTC
GGTAAGTTTA AACTGAACCT CGGTACGCGC GAGATGTTCC GTGAAGATGA ACCGATGCCG
CTGACCAGCG GGGAGTTTGC GGTACTGAAA GCGTTAGTCA GCCATCCGCG CGAGCCGCTC
TCTCGCGATA AGCTGATGAA TCTGGCCCGT GGCCGCGAGT ATTCCGCGAT GGAACGCTCC
ATCGACGTCC AGATCTCCCG CCTGCGCCGT ATGGTGGAAG AAGATCCGGC ACATCCGCGT
TATATTCAGA CCGTCTGGGG CCTGGGCTAC GTCTTTGTAC CGGACGGTTC TAAAGCATGA
 
Protein sequence
MQENYKILVV DDDMRLRALL ERYLTEQGFQ VRSVANAEQM DRLLTRESFH LMVLDLMLPG 
EDGLSICRRL RSQSNPMPII MVTAKGEEVD RIVGLEIGAD DYIPKPFNPR ELLARIRAVL
RRQANELPGA PSQEEAVIAF GKFKLNLGTR EMFREDEPMP LTSGEFAVLK ALVSHPREPL
SRDKLMNLAR GREYSAMERS IDVQISRLRR MVEEDPAHPR YIQTVWGLGY VFVPDGSKA