| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3842 |
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| Symbol | nirB |
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| ID | 6872085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 3664313 |
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| End bp | 3666856 |
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| Gene Length | 2544 bp |
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| Protein Length | 847 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642786808 |
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| Product | nitrite reductase [NAD(P)H], large subunit |
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| Protein accession | YP_002217436 |
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| Protein GI | 198243194 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.294363 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 67 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAAG TCAGACTCGC TATTATCGGT AATGGTATGG TCGGCCACCG CTTTATTGAG
GATCTCCTTG ATAAATCCGA CGCTAGCCTG TTCGACATTA CCGTGTTCTG TGAAGAACCC
CGTAAAGCCT ATGACCGTGT CCACCTGTCA TCCTACTTCT CTCACCACAC CGCGGAAGAG
CTCTCTCTGG TGCGTGAAGG ATTTTACGAG AAGCACGGCG TAAAGGTACT GGTTGGCGAA
CGCGCAATTA CCATTAACCG TCAGGAGAAA GTGATTCACT CCAGCGCGGG TCGTACCGTT
TATTATGACA AGCTGATCAT GGCGACCGGT TCCTATCCGT GGATCCCGCC GATTAAAGGC
TCCGAAACCC AGGATTGCTT CGTTTACCGT ACCATTGAAG ACCTCAACGC TATCGAAGCC
TGCGCCCGTC GCAGCAAGCG CGGGGCGGTG GTCGGCGGCG GTCTGCTGGG GCTGGAAGCC
GCTGGCGCGC TGAAAAACCT CGGCGTGGAA ACGCACGTCA TTGAATTTGC GCCAATGCTG
ATGGCGGAAC AACTCGATCA AATGGGCGGC GAGCAGCTAC GTCGCAAGAT CGAAAGCATG
GGCGTGCGTG TACACACCAG TAAAAACACG CAAGAGATTG TTCAGCAGGG TAACGAAGCA
CGTAAGACTA TGCGTTTTGC CGACGGCAGC GAGCTGGAAG TCGATTTCAT CGTCTTCTCT
ACCGGTATTC GCCCCCGCGA CAAGCTGGCT ACCCAGTGCG GTCTGGCCGT CGCGCAGCGC
GGCGGGATCG TGATTAACGA CACCTGCCAG ACGTCTGACC CAGATATCTA CGCTATCGGC
GAGTGCGCCA GTTGGAACAA CCGCGTTTAC GGTCTGGTCG CACCAGGCTA TAAAATGGCC
CAGGTCGCCG TTGACCATAT CCTCGGCAGT GAAAACGCCT TTGAAGGGGC GGATCTCAGC
GCCAAGCTGA AGCTGCTGGG CGTGGACGTC GGCGGCATCG GCGACGCGCA TGGCCGCACG
CCGGGCGCGC GTAGTTACGT TTACCTCGAT GAAAGCAAAG AAGTCTACAA ACGTCTAATT
GTCAGCGAAG ATAACAAAAC GCTGCTCGGC GCAGTACTGG TCGGCGACAC CAGCGATTAC
GGCAATTTGC TGCAACTGGT ACTGAACGCC ATCGAACTGC CGGAAAACCC GGATTCGCTG
ATCCTGCCGT CGCACGCGGG CAGTGGTAAA CCCGCTATCG GCGTGGATAA ACTGCCGGAC
AGCGCGCAGA TCTGCTCCTG CTTCGATGTG ACTAAAGGCG ATCTGATCGC CGCTATCAAT
AAAGGCTGCC ATACCGTGGC GGCGCTGAAA GCGGAAACCA AAGCCGGAAC CGGCTGCGGC
GGCTGCATCC CGCTGGTGAC GCAGGTACTG AACGCCGAAC TGGCGAAACA GGGTATTGAA
GTCAACAACA ACCTGTGCGA GCACTTTGCT TATTCTCGTC AGGAACTGTT CCACTTAATC
CGCGTGGAAG GTATCAAAAC CTTTGAAGAA CTGCTGGCGA AACACGGTAA AGGCTACGGC
TGCGAAGTGT GTAAGCCGAC CGTCGGTTCG CTGCTGGCGT CGTGCTGGAA CGAATACATC
CTCAAGCCGC AGCACACGCC GCTACAGGAT ACTAACGATA ACTTCCTGGC GAATATCCAG
AAAGACGGTA CTTACTCGGT GATCCCGCGC TCGGCGGGCG GCGAAATCAC CCCGGAAGGT
CTGGTGGCCG TGGGGCGTAT CGCCCGCGAG TTTAACCTCT ATACCAAAAT TACCGGTTCT
CAGCGTATCG GTCTGTTTGG CGCGCAAAAA GACGATCTGC CGGAAATCTG GCGTCAGTTG
ATTGAAGCCG GTTTCGAAAC CGGTCACGCG TACGCCAAAG CGCTGCGGAT GGCGAAAACC
TGCGTCGGCA GCACCTGGTG CCGCTACGGC GTGGGCGACA GCGTCGGTTT CGGCGTGGAG
CTGGAAAACC GCTACAAAGG CATTCGTACC CCGCACAAAA TGAAATTCGG CGTCTCCGGC
TGTACCCGTG AATGTGCGGA AGCGCAGGGC AAAGATGTGG GTATCATCGC CACGGAGAAA
GGCTGGAACC TGTACGTCTG CGGTAACGGC GGGATGAAAC CGCGTCATGC GGATCTGCTG
GCAGCCGATC TCGATCGCGA CACGCTGATC AAGTACCTCG ACCGCTTTAT GATGTTCTAC
ATCCGTACTG CCGACAAACT GACCCGTACC GCGCCGTGGC TGGATAATCT GGAAGGCGGC
ATCGAGTACC TGAAATCGGT CATCATCGAC GATAAGCTGG GCCTGAACGA ACATCTGGAA
GAAGAGATGG CGCGCCTGCG CGCAGCGGTG GTCTGCGAGT GGACAGAAAC CGTTAACACC
CCATCCGCAC AGGTTCGCTT TAAGCACTTT ATCAACAGCG ACAAACGCGA CCCGAACGTC
CAGGTTGTGC CTGAACGTGA ACAGCATCGT CCGGCCACGC CGTATGAACG TATCCCGGTC
ACTCTGGTGG AGGAAAACGC ATGA
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| Protein sequence | MSKVRLAIIG NGMVGHRFIE DLLDKSDASL FDITVFCEEP RKAYDRVHLS SYFSHHTAEE
LSLVREGFYE KHGVKVLVGE RAITINRQEK VIHSSAGRTV YYDKLIMATG SYPWIPPIKG
SETQDCFVYR TIEDLNAIEA CARRSKRGAV VGGGLLGLEA AGALKNLGVE THVIEFAPML
MAEQLDQMGG EQLRRKIESM GVRVHTSKNT QEIVQQGNEA RKTMRFADGS ELEVDFIVFS
TGIRPRDKLA TQCGLAVAQR GGIVINDTCQ TSDPDIYAIG ECASWNNRVY GLVAPGYKMA
QVAVDHILGS ENAFEGADLS AKLKLLGVDV GGIGDAHGRT PGARSYVYLD ESKEVYKRLI
VSEDNKTLLG AVLVGDTSDY GNLLQLVLNA IELPENPDSL ILPSHAGSGK PAIGVDKLPD
SAQICSCFDV TKGDLIAAIN KGCHTVAALK AETKAGTGCG GCIPLVTQVL NAELAKQGIE
VNNNLCEHFA YSRQELFHLI RVEGIKTFEE LLAKHGKGYG CEVCKPTVGS LLASCWNEYI
LKPQHTPLQD TNDNFLANIQ KDGTYSVIPR SAGGEITPEG LVAVGRIARE FNLYTKITGS
QRIGLFGAQK DDLPEIWRQL IEAGFETGHA YAKALRMAKT CVGSTWCRYG VGDSVGFGVE
LENRYKGIRT PHKMKFGVSG CTRECAEAQG KDVGIIATEK GWNLYVCGNG GMKPRHADLL
AADLDRDTLI KYLDRFMMFY IRTADKLTRT APWLDNLEGG IEYLKSVIID DKLGLNEHLE
EEMARLRAAV VCEWTETVNT PSAQVRFKHF INSDKRDPNV QVVPEREQHR PATPYERIPV
TLVEENA
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