| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3827 |
|---|
| Symbol | |
|---|
| ID | 6873036 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 3650631 |
|---|
| End bp | 3652538 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642786793 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_002217421 |
|---|
| Protein GI | 198242437 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGTTT TCTCCTCGTT ACAAATTCGT CGCGGCGTGC GCGTCCTACT GGACAATGCC
TCGGCTATCA TTAATCCAGG CCAGAAAGTC GGCCTGGTGG GTAAAAACGG CTGCGGTAAA
TCTACCCTGC TGGCATTGCT AAAAAATGAA ATCAGCGCCG ATGCCGGGAG TTTTACCCTG
CCCGGAACCT GGCAATTAGC GTGGGTGAAT CAGGAAACAC CTGCGTTGCC TCAGCCAGCG
ATTGAGTATG TCATTGACGG CGACCGTGAA TACCGGCAGC TGGAGGCGCA GCTTAACGAC
GCCAACGAAC ATAACGACGG ACATGCTATC GCCTCCATAC ATGGCAAGCT GGACGCCATC
GACGCATGGA CCGTTCGTTC GCGCGCCGCC AGCCTGCTAC ACGGTCTCGG CTTCTCTAAC
GATCAGCTGG AACGTCCGGT CAGCGACTTT TCCGGCGGCT GGCGGATGCG CCTTAACCTG
GCCCAGGCGC TGATTTGCCG TTCCGATTTA CTGCTGCTCG ACGAACCGAC CAACCACCTC
GATCTGGATG CCGTTATCTG GCTGGAAAAA TGGCTGAAGA GCTATCCGGG CACCCTGATT
CTGATCTCCC ACGATCGCGA TTTTCTTGAC CCGATAGTGG ATAAAATTAT CCATATCGAA
CAACAGACTC TGTTCGAGTA CACCGGCAAC TACAGCGCGT TTGAAGTTCA GCGCGCCACG
CGCCTGGCGC AGCAGCAGGC GATGTATGAG AGTCAGCAGG AGCGTGTGGC GCATCTGCAA
AGCTACATCG ACCGTTTCCG CGCCAAGGCC ACCAAGGCCA AGCAGGCGCA AAGCCGTATC
AAGATGCTGG AGCGTATGGA GTTGATTGCG CCGGCTCATG TCGACAACCC GTTCCATTTC
AGCTTCCGCG CGCCGGAAAG CCTGCCGAAC CCGCTGCTGA AAATGGAAAA AGTCAGCGCA
GGTTATGGCG ATCGCATCAT TCTGGAATCC ATCAAGCTGA ACCTGGTGCC CGGCTCGCGT
ATCGGCCTGC TGGGCCGCAA CGGCGCGGGG AAATCGACGC TGATCAAGCT GCTGGCGGGC
GAACTGGAAC CGTTGCACGG TGAAATCGGC CTCGCCAAAG GCATTAAGCT CGGCTACTTC
GCCCAGCACC AACTGGAGTT CCTGCGCGCC GATGAATCCC CGTTGCAGCA TATGGCGCGT
CTGGCGCCGC AGGAACTGGA GCAGAAGCTG CGCGACTATC TCGGCGGCTT CGGTTTCCAG
GGCGACAAAG TAACGGAAGA GACGCAACGT TTCTCCGGCG GCGAGAAAGC GCGCCTGGTA
CTGGCGCTGA TCGTCTGGCA GCGTCCAAAT CTGCTGTTGC TCGATGAACC GACCAACCAC
CTGGATCTCG ACATGCGTCA GGCGCTCACC GAAGCGCTGA TTGATTTCGA AGGCGCATTG
GTCGTCGTGT CGCACGACCG CCACCTGATT CGCTCCACCA CTGACGACCT CTATCTGGTT
CACGACAAAA AGGTCGAACC GTTCGACGGA GACCTGGAAG ATTATCAGCA ATGGCTGAGC
GACGTGCAGA AACAGGAAAA CCAGGCCGAC AACGCGCCGA AGGAAAACAA CGCCAACAGC
GCTCAGTCAC GCAAAGATCA GAAGCGTCGC GAAGCCGAGC TACGCACTCT GACGCAACCG
CTGCGTAAAG AGATTACCCG TCTGGAAAAA GAGATGGAAA AGCTCAACGC CCAATTAGCG
CAGGCGGAAG AGAAGCTCGG CGACAGCAGC CTGTATGACC CCAGCCGTAA AGCGGAGATG
ACCGAGTGTC TGCAACTGCA GGCCAGCGCC AAATCCGGGC TGGAAGCGTG TGAAATGGCA
TGGCTTGAGG CGCAGGAGCA GCTTGAGCAG ATGATGCAGA ACGACTAA
|
|---|
| Protein sequence | MIVFSSLQIR RGVRVLLDNA SAIINPGQKV GLVGKNGCGK STLLALLKNE ISADAGSFTL
PGTWQLAWVN QETPALPQPA IEYVIDGDRE YRQLEAQLND ANEHNDGHAI ASIHGKLDAI
DAWTVRSRAA SLLHGLGFSN DQLERPVSDF SGGWRMRLNL AQALICRSDL LLLDEPTNHL
DLDAVIWLEK WLKSYPGTLI LISHDRDFLD PIVDKIIHIE QQTLFEYTGN YSAFEVQRAT
RLAQQQAMYE SQQERVAHLQ SYIDRFRAKA TKAKQAQSRI KMLERMELIA PAHVDNPFHF
SFRAPESLPN PLLKMEKVSA GYGDRIILES IKLNLVPGSR IGLLGRNGAG KSTLIKLLAG
ELEPLHGEIG LAKGIKLGYF AQHQLEFLRA DESPLQHMAR LAPQELEQKL RDYLGGFGFQ
GDKVTEETQR FSGGEKARLV LALIVWQRPN LLLLDEPTNH LDLDMRQALT EALIDFEGAL
VVVSHDRHLI RSTTDDLYLV HDKKVEPFDG DLEDYQQWLS DVQKQENQAD NAPKENNANS
AQSRKDQKRR EAELRTLTQP LRKEITRLEK EMEKLNAQLA QAEEKLGDSS LYDPSRKAEM
TECLQLQASA KSGLEACEMA WLEAQEQLEQ MMQND
|
|---|
| |