| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3708 |
|---|
| Symbol | |
|---|
| ID | 6872852 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 3556250 |
|---|
| End bp | 3557617 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642786683 |
|---|
| Product | serine endoprotease |
|---|
| Protein accession | YP_002217317 |
|---|
| Protein GI | 198243897 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0987273 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 77 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC ACACCCAGCT GTTAAGTGCA TTAGCGTTAA GTGTCGGGTT AACTCTTTCG
GCGCCGTTTC CAGCCCTTGC ATCGATACCA AGCCAGGTGC CAGGCCAGGC GACGCTGCCA
AGCCTTGCCC CTATGCTGGA GAAAGTGCTG CCTGCTGTCG TCAGCGTAAA AGTCGAGGGA
ACCGCCGCCC AGAGCCAAAA AGTGCCGGAG GAGTTTAAAA AATTCTTTGG CGAGGATCTG
CCAGACCAGC CGTCCCAGCC GTTTGAAGGA CTCGGTTCGG GGGTGATTAT CGATGCCGCG
AAAGGCTATG TATTAACCAA TAATCATGTG ATTAATCAGG CACAGAAGAT CAGTATTCAA
CTGAATGACG GACGCGAATT CGACGCGAAG CTGATCGGCG GCGACGACCA GAGCGATATC
GCTCTGTTAC AAATTCAGAA TCCCAGCAAG TTAACGCAAA TTGCCATCGC CGATTCCGAC
AAACTCCGCG TCGGCGATTT CGCCGTGGCG GTCGGTAATC CGTTTGGTCT AGGACAAACC
GCCACCTCCG GGATTATTTC AGCGCTGGGA CGCAGCGGGC TTAATCTGGA AGGGCTTGAG
AACTTTATTC AAACCGATGC CTCTATTAAC CGCGGCAACT CCGGCGGCGC GCTGCTTAAC
CTGAACGGCG AGCTGATCGG GATTAATACC GCGATCCTCG CGCCAGGGGG CGGGAGCATC
GGCATTGGCT TTGCTATTCC TTCCAATATG GCGCAGACGC TGGCGCAGCA GTTGATTCAG
TTCGGCGAAA TCAAACGCGG ATTGCTGGGA ATTAAAGGCA CTGAAATGAC CGCTGATATT
GCTAAGGCAT TCAAACTGAA CGTTCAGCGT GGCGCTTTTG TCAGCGAGGT TTTACCCAAT
TCAGGTTCGG CGAAGGCCGG GGTGAAATCC GGAGACGTGA TTATCAGTCT TAACGGTAAG
CCGCTGAATA GCTTTGCCGA ACTGCGTTCG CGTATCGCCA CCACCGAACC GGGCACGAAA
GTGAAGCTGG GCCTGCTGCG CGATGGTAAG CCGCTGGAGG TGGAAGTCAC GCTGGATTCC
AATACCTCTT CTTCCGCCAG CGCCGAAATG ATCGCCCCGG CGTTGCAAGG CGCGACGTTG
AGCGACGGCC AGCTGAAAGA CGGGACGAAA GGCGTTAAGG TTGATAGCGT CGAAAAAAGC
AGTCCTGCCG CGCAGGCCGG TTTGCAAAAA GATGATGTTA TCATCGGCGT TAACCGCGAT
CGCATCAGTT CTATCGCCGA AATGCGCAAA GTGATGGCGG CAAAACCGTC CATCATTGCT
CTTCAGGTAG TACGCGGCAA CGAGAACATT TATCTATTGC TGCGCTAA
|
|---|
| Protein sequence | MKKHTQLLSA LALSVGLTLS APFPALASIP SQVPGQATLP SLAPMLEKVL PAVVSVKVEG
TAAQSQKVPE EFKKFFGEDL PDQPSQPFEG LGSGVIIDAA KGYVLTNNHV INQAQKISIQ
LNDGREFDAK LIGGDDQSDI ALLQIQNPSK LTQIAIADSD KLRVGDFAVA VGNPFGLGQT
ATSGIISALG RSGLNLEGLE NFIQTDASIN RGNSGGALLN LNGELIGINT AILAPGGGSI
GIGFAIPSNM AQTLAQQLIQ FGEIKRGLLG IKGTEMTADI AKAFKLNVQR GAFVSEVLPN
SGSAKAGVKS GDVIISLNGK PLNSFAELRS RIATTEPGTK VKLGLLRDGK PLEVEVTLDS
NTSSSASAEM IAPALQGATL SDGQLKDGTK GVKVDSVEKS SPAAQAGLQK DDVIIGVNRD
RISSIAEMRK VMAAKPSIIA LQVVRGNENI YLLLR
|
|---|
| |