| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3575 |
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| Symbol | rocD |
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| ID | 6874630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 3431754 |
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| End bp | 3433133 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642786563 |
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| Product | putrescine--2-oxoglutarate aminotransferase |
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| Protein accession | YP_002217199 |
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| Protein GI | 198245661 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
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| TIGRFAM ID | [TIGR03372] putrescine aminotransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 0.328531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAACAGGT TACCTTCCAG CGCATCGGCT TTGGCCTGTA GCGCGCACGC ACTGAATCTC
ATCGAGAAGC GAACGCTAAA CCATGAGGAA ATGAAAGCAC TAAACCGAGA GGTCATTGAC
TACTTTAAAG AGCATGTAAA TCCAGGATTT CTGGAATACC GGAAATCTGT TACCGCCGGC
GGGGATTACG GAGCCGTAGA GTGGCAAGCG GGCAGTTTGA ATACGCTTGT CGACACCCAG
GGGCAGGAGT TTATCGACTG TCTTGGGGGG TTTGGCATCT TTAACGTGGG GCACCGTAAT
CCTGTTGTGG TATCCGCCGT CCAGAATCAA CTCGCAAAAC AACCTCTCCA CAGCCAGGAG
TTACTTGACC CCTTGCGGGC GATGCTGGCA AAAACGCTGG CGGCGCTGAC ACCGGGGAAA
CTCAAGTACA GCTTTTTCTG TAACAGCGGC ACCGAATCCG TCGAAGCGGC GCTAAAACTG
GCAAAAGCGT ATCAGTCGCC ACGCGGCAAG TTTACCTTTA TCGCCACCAG CGGCGCATTT
CACGGCAAAT CATTGGGCGC GCTCTCCGCC ACGGCCAAAT CCACCTTCCG CAGACCCTTT
ATGCCTTTAC TGCCGGGCTT CCGCCATGTG CCGTTTGGCA ATATCGACGC GATGAGCATG
GCATTTAGCG AAGGCAAAAA AACGGGCGAC GAGATAGCAG CCGTGATTCT GGAGCCTATT
CAGGGTGAAG GCGGCGTGAT CCTGCCGCCG CAGGGATACC TGACAGAGGT ACGTAAGCTC
TGTGACGAAT TCGGCGCGCT GATGATTCTG GATGAAGTAC AAACCGGCAT GGGGCGTACC
GGCAAGATGT TTGCCTGTGA GCACGAAAAT GTGCAGCCTG ATATTCTGTG TCTGGCGAAA
GCCCTGGGCG GCGGCGTGAT GCCGATTGGC GCCACCATCG CGACTGAAGA GGTGTTTTCG
GTTCTGTTCG ACAATCCCTT CCTGCATACC ACCACTTTTG GCGGTAATCC GCTGGCTTGT
GCTGCCGCGC TGGCGACCAT TAACGTCCTG CTGGAGCAAA ATCTCCCGGC CCAGGCGGAA
CAAAAAGGCG ATACGCTCCT GGATGGTTTT CGACAACTTG CGCGTGAATA TCCCAATCTG
GTACACGATG CGCGCGGCAA AGGTATGTTG ATAGCCATTG AATTTGTCGA TAACGAAACG
GGCTACCGTT TTGCCAGTGA GATGTTCCGT CAACGCGTGC TGGTCGCTGG TACGCTGAAT
AATGCGAAAA CAATTCGTAT CGAGCCACCG CTCACGCTAA CCATTGAACT GTGCGAACAG
GTATTGAAAT CAGCGCGTAA TGCGCTGGCG GCAATGCAGG TGAGCGTTGA AGAGGTTTAA
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| Protein sequence | MNRLPSSASA LACSAHALNL IEKRTLNHEE MKALNREVID YFKEHVNPGF LEYRKSVTAG
GDYGAVEWQA GSLNTLVDTQ GQEFIDCLGG FGIFNVGHRN PVVVSAVQNQ LAKQPLHSQE
LLDPLRAMLA KTLAALTPGK LKYSFFCNSG TESVEAALKL AKAYQSPRGK FTFIATSGAF
HGKSLGALSA TAKSTFRRPF MPLLPGFRHV PFGNIDAMSM AFSEGKKTGD EIAAVILEPI
QGEGGVILPP QGYLTEVRKL CDEFGALMIL DEVQTGMGRT GKMFACEHEN VQPDILCLAK
ALGGGVMPIG ATIATEEVFS VLFDNPFLHT TTFGGNPLAC AAALATINVL LEQNLPAQAE
QKGDTLLDGF RQLAREYPNL VHDARGKGML IAIEFVDNET GYRFASEMFR QRVLVAGTLN
NAKTIRIEPP LTLTIELCEQ VLKSARNALA AMQVSVEEV
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