Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3520 |
Symbol | |
ID | 6874833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 3378649 |
End bp | 3379632 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642786510 |
Product | trap dicarboxylate transporter DctP subunit |
Protein accession | YP_002217147 |
Protein GI | 198244579 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.656034 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACA CACGTTCATT CACAACATCA GCGGTATTAC TGGCCGGCTG TTTGCTACTG GCATTTCCAG CGCTCGCCAA AACCACGCTG AAACTGAGCC ACAATCAGGA TAAAAGCCAC GCCGTTCACA AAGCGATGAG CTATCTGGCC GATAAAGCGA AAGCCTATTC GGACGGCGAA TTAAATATTC GTATTTACCC CAACGCCACG CTGGGCAACG AACGTGAATC GCTGGAATTG ATGAACTCCG GCGCTCTGCA AATGGTGAAA GTCAATGCGG CATCGCTGGA GTCTTTTGCG CCGGAATATA GCGTGTTTAG CCTGCCGTTT TTATTCCGCG ACCGCGATCA CTACTACAAC GTACTGAAAA GCGACTTAGG GAAACGCATT CTCGCGTCCT CCGAAAGCAA AGGCTTCGTC GGCTTAACCT GGTACGACGG CGGCGCCCGC AGTTTTTACG CTGGTAAGCC CATCACTCAA CCCGACGATT TAGCCGGTAT GAAAATCAGA GTGCAGCAAA GCCCCAGCGC TATCGCGATG GTGAAAGCGC TCGGCGGCGT GCCGACGCCG ATGGCGCAAG GCGAACTCTA TACCGCGCTC CAGCAAGGCG TGGTCGATGG CGGCGAAAAC AACCCCGTGG TTTATGCCGA TATGCGTCAT GCGGAGGTGG CGAAATTCTA TTCCCGCGAC GAGCACACGA TGGTGCCGGA TGTCCTGGTC ATCAGTACCA AAGTACTTAA CAAATTGAGC GATAAAGAGC GGAAAGCGTT ATATAAAGCC GCAGATGAAT CCATGCAGCA AATGAAAGAC GTCATCTGGC CCGCCGCGGA AAAAGAGGCT TATGAGAGCA TGAAGGCCAT GAATGCGACC GTTGTTGATA TTGATAAATC CGCGTTCAAA CAGCGTGTTA AGCCCTTGTT TGATGAGTTC CGCGCGAAAG ATGCTCAATC AGCGAAGGAT CTGGAATACA TCGAGAATAT GTAA
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Protein sequence | MKNTRSFTTS AVLLAGCLLL AFPALAKTTL KLSHNQDKSH AVHKAMSYLA DKAKAYSDGE LNIRIYPNAT LGNERESLEL MNSGALQMVK VNAASLESFA PEYSVFSLPF LFRDRDHYYN VLKSDLGKRI LASSESKGFV GLTWYDGGAR SFYAGKPITQ PDDLAGMKIR VQQSPSAIAM VKALGGVPTP MAQGELYTAL QQGVVDGGEN NPVVYADMRH AEVAKFYSRD EHTMVPDVLV ISTKVLNKLS DKERKALYKA ADESMQQMKD VIWPAAEKEA YESMKAMNAT VVDIDKSAFK QRVKPLFDEF RAKDAQSAKD LEYIENM
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