Gene SeD_A3458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3458 
Symbol 
ID6875275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3319834 
End bp3321969 
Gene Length2136 bp 
Protein Length711 aa 
Translation table11 
GC content54% 
IMG OID642786452 
Productornithine decarboxylase 
Protein accessionYP_002217090 
Protein GI198244175 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1982] Arginine/lysine/ornithine decarboxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.829522 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAA TGAATATTGC CGCCAGCGGT GAACTCATCC CCTGTCTCTC CACCCACCGA 
AACGTAGTGG CGCTGGACAG TACCGACTTT ACCGATGTGG CCGCAGTCGT CATTACCACT
GCCGACAGCC GTAGCGGTAT TCTGGCGTTG CTTAAACGCA CCGGTTTTCA CCTGCCGGTG
TTTATGCTTG CGGATGAACC CGTCAGCGCG CCTGTCGGCG TTACGGCGGT AATCGGCGGG
AACGCGCAGG AATGGCTGGA GTTGGAAAAC GCCGCCAGTC GCTACGAAGC GGAACTTCTG
CCGCCCTTTT ATGACACCCT GACCCAATAT GTCGACATGG GGAATAGTAC CTTTGCTTGT
CCGGGGCACC AGCATGGCGA GTTTTTTAGA AAACATCCCG CAGGCCGCCA TTTTTATGAC
TTTTTTGGTG AAAACCTGTT TCGTGCGGAT ATGTGTAACG CCGATGTGAA ACTTGGCGAT
CTGCTAATAC ATGAAGGTTC TGCCAAACAC GCGCAGAAAT TTGCGGCAAA AGTGTTTAAT
GCGGATAAAA CCTATTTTGT GCTGAATGGA ACTTCGGCGG CGAATAAAGT GGTCACCAAT
GCCCTGCTGA CGCGCGGCGA TCTGGTGCTG TTTGATCGTA ATAATCACAA ATCCAACCAC
CACGGCGCCC TGATTCAGGC CGGGGCGACG CCGGTCTATC TTGAAGCGGC GCGCAACCCG
TTTGGTTTTA TCGGTGGTAT TGATGCGCAC TGTTTTGATG AAACGTACCT GCGCGACCAG
ATTCGTGATG TGATGCCGGA AAGCGCCGAT GCATCGCGTC CGTTCCGCCT GGCGATCATT
CAACTGGGTA CCTATGACGG CACTATTTAC AACGCCCGTC AGGTGGTGGA TAAAATCGGG
CATCTCTGCG ATTACATTCT GTTTGACTCC GCGTGGGTAG GCTATGAGCA GTTTATCAAT
ATGATGGCGG ATACCTCGCC GTTGCGGCTG GAGCTTAATG AAAACGACCC TGGGATCTTT
GTGACCCAAT CGGTACATAA GCAACAGGCG GGGTTCTCAC AAACCTCGCA GATCCACAAA
AAAGATAACC ATATTCGCGG CCAGGCGCGT TTTTGCCCGC ACAAACGCCT GAACAACGCC
TTCATGTTGC ACGCCTCGAC CAGTCCGTTC TACCCGCTGT TTGCGGCGCT GGATATCAAT
GCCAAAATCC ACGAAGGGGA GAGCGGTCGC CGCCTGTGGG CGGAGTGCGT TGCGCTGGGC
ATTGACGCGC GTAAAGCCAT TCTCGCCCGT TGCAAACTGC TTCAGCCCTT TATCCCACTG
GTGGTTGACG GCAAGCCGTG GCAGGCATAT CCGACGGAGA CCATTGCCAG CAATCGTCGT
TTCTTCAGTT TTGAGCCCGG GGCGAAATGG CATGGCTTTG AGGGTTATGC GGATGACCAG
TATTTTGTCG ACCCCTGTAA ACTGTTACTG ACCACGCCAG GTATTGATGC CGATAGCGGG
CAGTACACCG AATTCGGCAT CCCGGCGACC ATTCTCGCCC ACTATCTGCG TGAGAACGGT
ATTGTGCCTG AGAAATGCGA TCTCAACTCG ATTCTGTTCT TGCTGACACC CGCCGAGAGC
GAAGAGAAAC TGGCGCGGCT GGTCGCGATG CTGGCGCAAT TTGAACGGCA CATTGAAGAC
GATACGCCGC TTGCGGATGT ATTGCCGACG GTTTTTCAGA AATACCCGGT GCGCTACCGC
GATTACACCC TGCGTGAGCT ATGTCAGGAG ATGCACAACC TGTACGTTAG CTTTGACGTT
AAGGATCTGC AAAAAGCGAT GTTTCGCAAA GAAAGCCTGC CGCATGTGGC GATGAACCCA
CAGGATGCCA ACAGCGCCTT TATTCGCGGC GATGTAGAGC TGGTGCGTAT CAGCGAGGCG
GGCGGGCGTA TTGCTGCCGA GGGGGCATTG CCATACCCGC CGGGCGTACT GTGCGTGGTG
CCGGGGGAGA TTTGGGGTGG CGCGGCGCAG CGTTATTTTT TGGCGCTGGA AGAGGGCATC
AATCTGTTGC CCGGTTTTTC GCCGGAATTG CAGGGGGTAT ATAGCGAGAC CGATGCCGAT
GGAATTCAAC GCTTGTACGG ATATGTTTTA AAGTAA
 
Protein sequence
MKSMNIAASG ELIPCLSTHR NVVALDSTDF TDVAAVVITT ADSRSGILAL LKRTGFHLPV 
FMLADEPVSA PVGVTAVIGG NAQEWLELEN AASRYEAELL PPFYDTLTQY VDMGNSTFAC
PGHQHGEFFR KHPAGRHFYD FFGENLFRAD MCNADVKLGD LLIHEGSAKH AQKFAAKVFN
ADKTYFVLNG TSAANKVVTN ALLTRGDLVL FDRNNHKSNH HGALIQAGAT PVYLEAARNP
FGFIGGIDAH CFDETYLRDQ IRDVMPESAD ASRPFRLAII QLGTYDGTIY NARQVVDKIG
HLCDYILFDS AWVGYEQFIN MMADTSPLRL ELNENDPGIF VTQSVHKQQA GFSQTSQIHK
KDNHIRGQAR FCPHKRLNNA FMLHASTSPF YPLFAALDIN AKIHEGESGR RLWAECVALG
IDARKAILAR CKLLQPFIPL VVDGKPWQAY PTETIASNRR FFSFEPGAKW HGFEGYADDQ
YFVDPCKLLL TTPGIDADSG QYTEFGIPAT ILAHYLRENG IVPEKCDLNS ILFLLTPAES
EEKLARLVAM LAQFERHIED DTPLADVLPT VFQKYPVRYR DYTLRELCQE MHNLYVSFDV
KDLQKAMFRK ESLPHVAMNP QDANSAFIRG DVELVRISEA GGRIAAEGAL PYPPGVLCVV
PGEIWGGAAQ RYFLALEEGI NLLPGFSPEL QGVYSETDAD GIQRLYGYVL K