Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3447 |
Symbol | |
ID | 6872939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 3310174 |
End bp | 3311310 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642786441 |
Product | coproporphyrinogen III oxidase |
Protein accession | YP_002217079 |
Protein GI | 198243140 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.286445 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTAAAC TACCGCCGCT CAGTCTTTAT ATTCATATTC CCTGGTGTGT ACAAAAATGT CCATATTGCG ACTTCAATTC CCATGCGTTG AAGGGCGAGG TGCCACATGA CGACTACGTC CAGCATCTGT TAAACGATCT GGATGCCGAC GTCGCCTGGG CGCAAGGGCG TGAAGTAAAG ACCATTTTTA TTGGCGGCGG TACGCCAAGC CTGCTTTCCG GGCCGGCGAT GCAAACGCTG CTGGACGGCG TGCGTGCGCG CCTGAATCTG GCGGCGGATG CGGAAATTAC TATGGAAGCG AACCCCGGCA CGGTCGAAGC CGACCGCTTC ATCGACTATC AGCGCGCCGG CGTAAACCGG ATCTCCATTG GCGTGCAGAG CTTTAGTGAG CCTAAGCTGA AACGTCTTGG CCGTATTCAC GGTCCACAAG AGGCGATACG GGCAGCAAGA CTGGCAAATG GACTTGGGCT ACGCAGCTTT AACCTCGACT TGATGCATGG ATTGCCGGAT CAAACGCTGG AAGAGGCGCT GAATGATTTG CGACAGGCGA TTGCGCTTAA TCCGCCGCAT CTCTCATGGT ATCAATTGAC GATTGAACCC AACACTTTGT TCGGTTCGCG TCCGCCGGTT TTACCGGACG ATGACGCTCT GTGGGATATC TTTGAGCAGG GCCACCAGTT ATTAACCGCC GCGGGCTATC AGCAATACGA AACGTCGGCC TATGCCAAAC CCGGTTATCA GTGCCAGCAT AATCTGAACT ACTGGCGCTT TGGCGACTAT CTGGGTATTG GCTGCGGCGC CCACGGTAAA GTCACCTTCC CGGGCGGCAG GATCCTGCGC ACCACCAAAA CCCGTCACCC ACGCGGTTAT ATGCAGGGAC GTTACCAGGA AAGCCAGCGT GACGTGAGTG ATGATGACAA ACCCTTTGAG TTCTTTATGA ACCGTTTTCG GTTGCTGAAG CGCGCGCCTC GCGCCGAATT TGTCGATTAT ACCGGGCTTA CGGAAGCGGT TATTCGTCAG CCAATCGACG AGGCTATTGC CCAGGGCTAC CTGACCGAAT GCGAGCAATA CTGGCAGATT ACCCGGCACG GTAAACTGTT TTTAAACTCT CTTCTTGAGT TGTTTCTCGC GGAATAA
|
Protein sequence | MAKLPPLSLY IHIPWCVQKC PYCDFNSHAL KGEVPHDDYV QHLLNDLDAD VAWAQGREVK TIFIGGGTPS LLSGPAMQTL LDGVRARLNL AADAEITMEA NPGTVEADRF IDYQRAGVNR ISIGVQSFSE PKLKRLGRIH GPQEAIRAAR LANGLGLRSF NLDLMHGLPD QTLEEALNDL RQAIALNPPH LSWYQLTIEP NTLFGSRPPV LPDDDALWDI FEQGHQLLTA AGYQQYETSA YAKPGYQCQH NLNYWRFGDY LGIGCGAHGK VTFPGGRILR TTKTRHPRGY MQGRYQESQR DVSDDDKPFE FFMNRFRLLK RAPRAEFVDY TGLTEAVIRQ PIDEAIAQGY LTECEQYWQI TRHGKLFLNS LLELFLAE
|
| |