Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3349 |
Symbol | kduD |
ID | 6873944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 3225321 |
End bp | 3226082 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642786353 |
Product | 2-deoxy-D-gluconate 3-dehydrogenase |
Protein accession | YP_002216992 |
Protein GI | 198243848 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 0.143786 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTTGA ATGCATTTTC TCTTGAAGGT AAAGTCGCGG TTGTGACGGG GTGCGATACC GGATTGGGGC AGGGGATGGC GTTAGGGCTG GCGGAAGCGG GCTGTGACAT TGTCGGTATT AACATTGTTG AACCGACGGA CACTATTGCG CGCGTCACCG CACTGGGACG TCGTTTTTTA AGCCTGACGG CCGATCTGCG CCAAATCGAT GGTATTCCGG CGCTACTGGA ACGGGCGGTG GCGGAATACG GTCATATTGA TATTCTGGTG AATAACGCGG GTTTGATCCG TCGTGAAGAT GCGATTGATT TCACGGAAAA AGACTGGGAT GACGTCATGA ACCTGAACAT CAAGAGCGTG TTCTTTATGT CTCAGGCGGC GGCAAAACAT TTTATTGCCC AGGGCAACGG CGGCAAAATT ATTAATATCG CGTCTATGCT TTCCTTCCAG GGCGGAATTC GCGTTCCGTC TTATACCGCG TCGAAAAGCG GCGTAATGGG AATAACGCGT CTGATGGCGA ACGAGTGGGC GAAACACAAT ATCAATGTAA ACGCCATCGC GCCGGGCTAT ATGTCCACAA ATAATACCCA GCAATTGCGC GCTGATGCAC AACGTAGCGC CGAAATTCTC GACCGTATTC CGGCTGGACG TTGGGGGCTA CCGAGCGATT TAATGGGGCC GGTAGTCTTC CTGGCATCCA GCGCCGCTGA TTATATTAAC GGCTATACCA TAGCGGTAGA TGGCGGTTGG CTGGCGCGTT AA
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Protein sequence | MILNAFSLEG KVAVVTGCDT GLGQGMALGL AEAGCDIVGI NIVEPTDTIA RVTALGRRFL SLTADLRQID GIPALLERAV AEYGHIDILV NNAGLIRRED AIDFTEKDWD DVMNLNIKSV FFMSQAAAKH FIAQGNGGKI INIASMLSFQ GGIRVPSYTA SKSGVMGITR LMANEWAKHN INVNAIAPGY MSTNNTQQLR ADAQRSAEIL DRIPAGRWGL PSDLMGPVVF LASSAADYIN GYTIAVDGGW LAR
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