Gene SeD_A3254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3254 
Symbolcse1 
ID6874405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3125576 
End bp3127132 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content54% 
IMG OID642786269 
Productcrispr-associated protein, Cse1 family 
Protein accessionYP_002216910 
Protein GI198243398 
COG category 
COG ID 
TIGRFAM ID[TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value0.552745 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAATT TTTCACTTTT AACAACGCCC TGGCTCCCCG TCCGTTTCAA AGACGGTTCC 
ACGGGCAAGC TGGCCCCCGT CGATCTGGCG GATGAAAACG TGGTGGACAT CGCCGCAACG 
CGAGCAGATT TACAGGGAGC GGCCTGGCAG TTTCTGTTGG GATTGCTGCA ATGCAGTATC 
GCGCCGAAAA GATACAAAAA TTGGGAGGAT ATCTGGTTTG ATGGATTGCA TGCCGATGTG 
CTCCATAAGG CATTAGCACC GTTAGAACAC GCTTTTCAGT TTGGCGCGGA ATCCCCCTCG 
TTTATGCAGG ATTTTGAACC GTTAAGCGGC GAAAAAGTCT CTATTGCCTC ATTGTTGCCG 
GAAATACCTG GCGCGCAAAC CACGAAGTTC AATAAAGATC ATTTTGTCAA ACGCGGCGTA 
ACGGAACGTT TTTGTCCGCA CTGCGCGGCG CTGGCGCTGT TCTCGTTGCA GCTTAACGCG 
CCTGCGGGCG GCAAAGGCTA TCGTACCGGG CTGCGCGGCG GCGGGCCACT GACCACGCTG 
GTTGAATTGC AGGAATATCA GGGCGAGCGG CAAACGCCGA TCTGGCGCAA GCTGTGGCTC 
AACGTGATGC CGCAGGATAC TGCGGATCTG CCTTTACCAG ACCAGTGTGA TGCGACCGTT 
TTCCCGTGGC TTGCCGCGAC GCGGACCAGC GAGCAGGCGA ATGCCGTTAC CACGCCGGAG 
CAGGTCAATA AACTCCAGGC GTACTGGGGG ATGCCGCGTC GTATCCGCCT GGATTTTGCC 
ACCTTACAGT CAGGTTGCTG CGATATTTGC GGCGCTGAAA GCGATGAGCT TCTTGGCTTT 
ATGACCGTCA AGAACTACGG CGTTAACTAC GATGGCTGGC GGCACCCGCT GACGCCTTAT 
CGCGCCCCGG TAAAAGATCA AAACGCCTTC TTTTCCGTTA AACCGCAGCC CGGCGGCCTT 
ATCTGGCGCG ACTGGCTGGG GTTAAGTCAG AACAACCAGA CGGAAGCGAA TTACGAATCT 
CCCGCGCAGG TAGTCAAGGT GTTTAACGCC CGCTCGCTGA CTGACGTTAA AGCGGGGATC 
CGGGGCTTTG GCGCGGATTT CGACAATATG AAAATCCGCT GCTGGTATGA GCATCACTTC 
CCGTTGCTGA TGACGGAAGG TCTGATCCCT GATTTACGTA AGGCCGTGCA AACTGCGGCC 
CGCCTGTTGA GCCTGCTTCG CAGTGCGCTA AAAGAAGCGT GGTTCACCAA TGCGAAGGAT 
GCGCGGGGTG ATTTCAGTTT TATCGACATT GATTTCTGGA ACCTGACGCA GGGGCGCTTT 
CTCAATCTGA TCCACGATCT GGAAAACGGA CACAAGCCGG ACGAAAGGCT GAATAAATGG 
CAAAGAGAAC TTTGGCTGTT TACCCGTTGT TACTTCGATG ATCACGTCTT TACCAACCCC 
TACGAGAGCA GCGATCTGGA GCGCATCATG AAGGCGCGCA AAAAATATTT TACTTCATCG 
GCGGAAAAGC AAAGCGCAAA AGCCGCCAAA GCAAAGAAAC AGGAGGCTGC TGAATGA
 
Protein sequence
MDNFSLLTTP WLPVRFKDGS TGKLAPVDLA DENVVDIAAT RADLQGAAWQ FLLGLLQCSI 
APKRYKNWED IWFDGLHADV LHKALAPLEH AFQFGAESPS FMQDFEPLSG EKVSIASLLP 
EIPGAQTTKF NKDHFVKRGV TERFCPHCAA LALFSLQLNA PAGGKGYRTG LRGGGPLTTL 
VELQEYQGER QTPIWRKLWL NVMPQDTADL PLPDQCDATV FPWLAATRTS EQANAVTTPE 
QVNKLQAYWG MPRRIRLDFA TLQSGCCDIC GAESDELLGF MTVKNYGVNY DGWRHPLTPY 
RAPVKDQNAF FSVKPQPGGL IWRDWLGLSQ NNQTEANYES PAQVVKVFNA RSLTDVKAGI 
RGFGADFDNM KIRCWYEHHF PLLMTEGLIP DLRKAVQTAA RLLSLLRSAL KEAWFTNAKD 
ARGDFSFIDI DFWNLTQGRF LNLIHDLENG HKPDERLNKW QRELWLFTRC YFDDHVFTNP 
YESSDLERIM KARKKYFTSS AEKQSAKAAK AKKQEAAE