Gene SeD_A3160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3160 
SymbolhycD 
ID6874855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3040011 
End bp3040934 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content59% 
IMG OID642786181 
Productformate hydrogenlyase, subunit D 
Protein accessionYP_002216822 
Protein GI198244705 
COG category[C] Energy production and conversion 
COG ID[COG0650] Formate hydrogenlyase subunit 4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value0.184477 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGTAT TTTATCCGTT AATTCAGGCG CTGGTGCTAT TTGCCGTTGC GCCATTGCTG 
TCCGGTATTA CTCGCGTGGC GCGCGCCCGT CTACACAATC GCCGTGGGCC GGGCGTGTTG
CAGGAGTACC GCGACATTAT CAAACTGCTC GGTCGTCAGA GTATTGCGCC CGCGGATTCC
GGCTGGGTTT TCCGCCTGAC GCCGTTTGTG ATGGTCGGCG TGATGCTGAC TATCGCCACC
GCGCTGCCGG TTGTCACCGT TGGATCTCCG TTGCCGCAAC TGGGTGATTT AATCACCCTG
ATTTACCTGT TCGCGATTGC GCGCTTCTTC TTCTCTATTG CAGGCCTGGA TACCGGCAGT
CCGTTCACCG CGATCGGCGC CAGCCGTGAA GCGATGCTCG GCGTGCTGGT GGAGCCGATT
CTGCTGCTGG GTCTGTGGGT CGCCGCGCAG GTGGCGGGTT CAACTCATAT CAGCAATATC
GCCGATACCA TTTATCACTG GCCTGTCGCG CGCAGTATTC CGCTGATTCT GGCGCTGTGC
GCCTGCGCCT TCGCCACCTT TATCGAAATG GGCAAGCTGC CGTTCGACCT GGCGGAAGCG
GAGCAGGAGT TGCAGGAAGG GCCGTTGACC GAATACAGCG GTAGCGGCTT TGCGGTGCTG
AAATGGGGCA TCAGCCTTAA GCAACTGGTG GTGCTGCAAA TGTTCGTCGG CGTGTTTCTG
CCGTGGGGAC AGATGGAAAC CTTCAGCGCA GGCGGACTGT TGCTGGCGCT GGTGATTGCC
GTCGTCAAGC TGATTGTCGG CGTACTGGTG ATCGCCCTGT TTGAAAACAG CATGGCGCGA
CTGCGTTTTT GCGCCACTTC ACGCGTGACC TGGGCCGGTT TTGGGTTTGC GTTTTTAGCC
TTCGTCTCCT TGCTGGCGGC GTGA
 
Protein sequence
MSVFYPLIQA LVLFAVAPLL SGITRVARAR LHNRRGPGVL QEYRDIIKLL GRQSIAPADS 
GWVFRLTPFV MVGVMLTIAT ALPVVTVGSP LPQLGDLITL IYLFAIARFF FSIAGLDTGS
PFTAIGASRE AMLGVLVEPI LLLGLWVAAQ VAGSTHISNI ADTIYHWPVA RSIPLILALC
ACAFATFIEM GKLPFDLAEA EQELQEGPLT EYSGSGFAVL KWGISLKQLV VLQMFVGVFL
PWGQMETFSA GGLLLALVIA VVKLIVGVLV IALFENSMAR LRFCATSRVT WAGFGFAFLA
FVSLLAA