| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3114 |
|---|
| Symbol | nrdF |
|---|
| ID | 6875373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 2999298 |
|---|
| End bp | 3000257 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642786138 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit beta |
|---|
| Protein accession | YP_002216784 |
|---|
| Protein GI | 198241755 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0208] Ribonucleotide reductase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.514599 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAT CTCGTATTAG CGCCATCAAC TGGAACAAGA TCCAGGACGA CAAAGATCTG
GAGGTATGGA ACCGGCTGAC CAGTAACTTC TGGCTGCCGG AAAAAGTGCC GTTATCGAAT
GATATTCCGG CCTGGCAGAC GCTGAGCGCC GCCGAACAGC AGCTCACCAT TCGCGTGTTT
ACGGGACTTA CGCTGCTCGA CACTATCCAG AACATCGCAG GCGCGCCGTC GTTAATGGCA
GATGCCATCA CGCCGCATGA AGAGGCAGTG CTGTCGAACA TCAGCTTTAT GGAAGCGGTA
CACGCCCGCT CTTACAGTTC TATTTTTTCC ACGCTGTGCC AGACGAAAGA GGTTGATGTC
GCCTACGCCT GGAGCGAAGA AAACCCGCCG CTTCAGCGTA AGGCGCAGAT TATTTTGGCT
CATTACGTCA GCGATGAACC GCTAAAGAAA AAGATTGCCA GCGTCTTTTT AGAGTCTTTT
CTGTTCTATT CCGGCTTCTG GCTGCCGATG TATTTCTCCA GCCGCGGTAA GCTCACGAAC
ACTGCCGACC TGATTCGTTT AATCATTCGC GATGAAGCGG TTCACGGTTA TTATATTGGT
TATAAGTATC AGATAGCGCT ACAAAAACTA TCGGCAATCG AGCGTGAAGA GTTAAAGCTT
TTCGCGCTGG ATTTGTTGAT GGAACTGTAC GACAACGAAA TCTGCTACAC AGAAGCGTTA
TATGCGGAAA CCGGCTGGGT TAACGACGTC AAAGCCTTCT TGTGCTACAA CGCCAATAAA
GCCTTAATGA ACCTGGGTTA TGAGGCGTTA TTTCCGCCAG AGATGGCTGA CGTGAATCCC
GCAATCCTTG CCGCGCTCTC GCCGAATGCC GACGAAAATC ATGATTTCTT TTCCGGATCA
GGTTCATCTT ATGTGATGGG GAAAACAGTC GAAACCGAAG ACGAAGACTG GAATTTTTAA
|
|---|
| Protein sequence | MKLSRISAIN WNKIQDDKDL EVWNRLTSNF WLPEKVPLSN DIPAWQTLSA AEQQLTIRVF
TGLTLLDTIQ NIAGAPSLMA DAITPHEEAV LSNISFMEAV HARSYSSIFS TLCQTKEVDV
AYAWSEENPP LQRKAQIILA HYVSDEPLKK KIASVFLESF LFYSGFWLPM YFSSRGKLTN
TADLIRLIIR DEAVHGYYIG YKYQIALQKL SAIEREELKL FALDLLMELY DNEICYTEAL
YAETGWVNDV KAFLCYNANK ALMNLGYEAL FPPEMADVNP AILAALSPNA DENHDFFSGS
GSSYVMGKTV ETEDEDWNF
|
|---|
| |