| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2792 |
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| Symbol | ligA |
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| ID | 6871774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 2665245 |
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| End bp | 2667260 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642785846 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_002216496 |
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| Protein GI | 198243638 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.755122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 82 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACCAA TCGAACAACA ACTGACAGAA CTGCGAACCA CGCTTCGCCA TCATGAATAT
CTGTATCATG TGATGGATGC GCCAGAGATT CCCGATGCCG AATATGACCG CCTGATGCGG
GAACTGCGAG AGCTGGAGGC GCAACGTCCG GACCTTATCA CGCCGGATTC GCCCACGCAG
CGCGTTGGCG CGGCGCCGCT GACGGCATTC AACCAGATTC GCCATGAAGT ACCGATGCTG
TCGCTCGATA ACGTATTTGA TGAAGAAAGC TTCCTGGCGT TTAACAAGCG AGTGCAGGAT
CGTCTAAAAA GCACGGAAAA TGTCATCTGG TGCTGCGAGC TAAAACTGGA TGGCCTGGCG
GTCAGCATTC TGTATGAAAA CGGCGTGCTG GTGAGCGCTG CGACGCGTGG CGACGGCACC
ACCGGTGAAG ATATCACTTC AAACGTGCGC ACGATTCGCG CCATTCCGTT AAAGCTGCAC
GGCGATAACA TTCCGGCGCG TCTTGAAGTT CGCGGAGAGG TATTTTTACC GCAGGCCGGG
TTTGAAAAGA TCAATGAAGA CGCGCGCCGC ACTGGCGGCA AAGTGTTTGC TAACCCGCGT
AACGCGGCGG CGGGCTCGTT GCGTCAGCTC GATCCGCGTA TTACGGCGAA GCGACCGCTA
ACATTTTTCT GCTACGGCGT CGGTATTCTG GAAGGCGGCG AGTTGCCGGA TACGCATCTG
GGACGTTTGC TGCAATTTAA AGCGTGGGGG TTACCGGTCA GCGATCGCGT GACGCTGTGC
GATTCTCCCC AGGCGGTACT GGATTTTTAT CGCAACGTCG AAAAAGATCG CCCCACGCTC
GGTTTTGATA TCGACGGCGT GGTGATTAAG GTCAACTCGC TGGTTTTGCA GGAACAGCTG
GGCTTTGTGG CCCGCGCGCC GCGCTGGGCG GTGGCGTTTA AATTTCCTGC TCAGGAGCAG
ATGACTTTTG TGCGCGATGT TGAGTTTCAG GTCGGGCGCA CTGGGGCGAT TACGCCGGTG
GCGCGTCTGG AACCGGTTCA GGTGGCTGGT GTGCTGGTCA GCAATGCCAC GTTGCATAAT
GCCGATGAAA TTGAGCGACT TGGCTTGCGT ATTGGCGATA AGGTGGTTAT CCGTCGGGCA
GGCGATGTGA TCCCTCAGGT GGTCAACGTG GTTCTGTCCG AACGCCCTGA AGAGACGCGT
CCGATTGTGT TTCCAACGCA CTGTCCGGTG TGCGGATCGG ACGTAGAGCG CGTTGAAGGC
GAAGCCGTTA CCCGTTGTAC CGGCGGGCTG ATTTGCGGCG CGCAGCGTAA AGAGTCGCTG
AAACATTTTG TGTCGCGCCG GGCGATGGAT GTAGACGGGA TGGGCGATAA GATCATCGAC
CAACTGGTGG AAAGGGAGTA TGTCCATACG CCAGCGGATC TGTTCCGTCT GACGGCGGGT
AAACTGACCG GCCTGGACCG AATGGGGCCA AAGTCCGCGC AAAATGTTGT AAACGCGCTG
GAAAAAGCCA AAGCGACGAC TTTTGCGCGT TTTCTCTATG CGCTGGGCAT CCGTGAAGTG
GGTGAAGCGA CGGCGGCGGG GCTGGCGGCT TATTTCGGCA CGCTGGAGGC GCTGCAGACC
GCTACCATTG ACGAGTTGCA GAAAGTACCC GACGTGGGGA TTGTGGTCGC TACGCACGTC
TTTAACTTTT TTGCCGAAGA GAGCAATCGT GACGTGATTG GGCAGCTACT GGCGGAAGGG
GTTCACTGGC CCGCGCCGGT AGTCATTAAT GTGCAAGAGA TCGATAGCCC GTTTGCCGGT
AAAACCGTGG TACTAACCGG TAGCCTGAGC CAGATGTCCC GCGATGACGC TAAAGCGCGT
TTAGCGGCGC TGGGCGCGAA AGTGGCAGGC AGCGTATCGA AGAAAACCGA TCTGGTGATT
GCCGGTGAAG CGGCGGGCTC CAAACTGGCC AAAGCGCAGG AACTGGGTAT TACCGTGATT
GATGAAGCGG AAATGATCCG CTTACTGGGT GCCTGA
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| Protein sequence | MEPIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELEAQRP DLITPDSPTQ
RVGAAPLTAF NQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKSTENVIW CCELKLDGLA
VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GDNIPARLEV RGEVFLPQAG
FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGIL EGGELPDTHL
GRLLQFKAWG LPVSDRVTLC DSPQAVLDFY RNVEKDRPTL GFDIDGVVIK VNSLVLQEQL
GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVQVAG VLVSNATLHN
ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEETR PIVFPTHCPV CGSDVERVEG
EAVTRCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEREYVHT PADLFRLTAG
KLTGLDRMGP KSAQNVVNAL EKAKATTFAR FLYALGIREV GEATAAGLAA YFGTLEALQT
ATIDELQKVP DVGIVVATHV FNFFAEESNR DVIGQLLAEG VHWPAPVVIN VQEIDSPFAG
KTVVLTGSLS QMSRDDAKAR LAALGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGITVI
DEAEMIRLLG A
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