Gene SeD_A2406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2406 
Symbol 
ID6873235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp2277916 
End bp2278830 
Gene Length915 bp 
Protein Length304 aa 
Translation table11 
GC content53% 
IMG OID642785497 
ProductLysR substrate binding domain-containing protein 
Protein accessionYP_002216155 
Protein GI198243395 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.668519 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value0.0417714 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCAC TGCTGGACGT TCTGATTATT CTTGATGCGT TAGAAAAAGA AGGCAGCTTC 
GCGGCGGCGT CGGCAAAATT ATTTAAAACG CCGTCCGCCC TCAGTTATAC CGTTCATAAG 
CTGGAAAACG ATCTTAATAT CCAACTGCTC GACCGTAGCG GGCATCGCGC GCGATTTACG 
CGAACCGGTA AGATGCTACT GGAAAAAGGC CGTGAAGTGC TGCACACCGT TCGCGAGCTG 
GAAAAGCAGG CGATTAAACT GCATGAAGGC TGGGAGAACG AACTGGTCAT CGGTGTGGAT 
GATACCTTTC CCTTTTCTCT TCTGGCCCCG CTTATCGACG CTTTTTATCA ACGCCACAGC 
GTGACGCGCC TTAAATTTGT CAATGGCGTT CTCGGCGGTT CATGGGAGAC GCTGACGCAG 
GGAAGGGCGG ATATTATTGT TGGCGCCATG CGCGCGCCGC CGCCTGACAC CGGCTTTGGC 
TTTGCAAGAC TGGGCGATCT TGAACTGGTG TTTGCTGTCG CTCCGCATCA TCCGCTGGTT 
CATGAAGAGG AACCGCTTAG CCGCCAGACG ATCAAACGTT TTCGCGCGAT TGTGGTTGGC 
GATAGCGTCC ATTCCTCGCG ATCAATAGGG TCTGAACTGC TCGACGCTCA GGAAGCGATT 
ACCGTGTTTG ATTTTAAAAC CAAGCTGGAG CTGCAAATTA GCGGCCTGGG ATGCGGCTAT 
TTACCGCGTT ATCTGGCGCA GCGATTTTTG GAAAGCGGCG CGCTTATAGA GAAGAAAGTT 
GTGGCGCAAA TCGTCTATGA ACCGGTGTGG GTTGGCTGGA ATGAACAGAC CGCCGGGCTG 
GCCAGCGGCT GGTGGCGGGA TGAAATTTTA GCAAATAATG CTATTGCTGG GGTGTATGCA 
AAATCGCCGG TTTAA
 
Protein sequence
MKPLLDVLII LDALEKEGSF AAASAKLFKT PSALSYTVHK LENDLNIQLL DRSGHRARFT 
RTGKMLLEKG REVLHTVREL EKQAIKLHEG WENELVIGVD DTFPFSLLAP LIDAFYQRHS 
VTRLKFVNGV LGGSWETLTQ GRADIIVGAM RAPPPDTGFG FARLGDLELV FAVAPHHPLV 
HEEEPLSRQT IKRFRAIVVG DSVHSSRSIG SELLDAQEAI TVFDFKTKLE LQISGLGCGY 
LPRYLAQRFL ESGALIEKKV VAQIVYEPVW VGWNEQTAGL ASGWWRDEIL ANNAIAGVYA 
KSPV