Gene SeD_A1987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1987 
Symbol 
ID6873550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp1920090 
End bp1921241 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content50% 
IMG OID642785103 
Productputative acyl-CoA dehydrogenase 
Protein accessionYP_002215769 
Protein GI198244805 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.143395 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.00158428 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATTTTT CATTAACTGA AGAACAAGAA CTATTACTGG CCAGTATTCG CGAGTTAATC 
ACCAGCAATT TTCCGGAAGA GTATTTCCGT ACCTGCGATC AAACGGGCAC CTATCCCAAA 
GAATTTATGC AGGCGCTGGC GGAAAACGGT ATTTCGATGC TGGGCGTCCC GGAAGAATTC 
GGCGGCATTC CGGCTGACTA TGTAACGCAA ATGCTGGCGC TGATGGAAAT CTCAAAATGC 
GGCGCTCCGG CCTTTTTGAT TACCAACGGC CAATGCATTC ACAGTATGCG CCGTTTTGGT 
TCCGCAGAAC AACTGCGTAA AACAGCAGAA AGTACTCTGG CCACCGGCGA TCCAGCATAT 
GCGCTAGCCT TAACAGAACC TGGCGCGGGC TCTGATAATA ATAGCGCCAC AACAACCTGG 
ACGCGTAAAA ACGGCAAGGT TTATCTTAAC GGCCAAAAAA CATTTATCAC CGGTGCAAAA 
GAATATCCTT ACATGCTGGT TCTGGCGCGC GATACGGAGC CAAAAGATCC TAAAAAAGCG 
TTCACGCTTT GGTGGGTGGA CTCAAATAAA CCGGGCATAA AGATTAATCC GCTGCACAAA 
ATTGGCTGGC ACATGTTGAG TACATGCGAA GTTTATCTCG ATAATGTCGA GGTGGACGAA 
AGCGACCGGG TCGGTGAAGA AGGCATGGGT TTCCTCAATG TCATGTACAA TTTTGAGATG 
GAGCGTTTGA TTAATGCGGC GCGCAGTACA GGTTTCGCCG AATGCGCGTT TGAAGATGCC 
GCCCGTTACG CCAACCAGCG TATCGCCTTT GGTAAACCCA TCGGCCATAA CCAGATGATC 
CAGGAAAAGC TGGCGTTAAT GGCCATCAAA ATCGAAAACA TGCGCAATAT GGTGTTGAAA 
ATCGCCTGGC AGGCCGATCG GGAAGAGTCA CTGCGTACCA GCGCCGCGCT GGCTAAGCTG 
TACTGCGCAC GCACAGCGAT GGAAGTGATT GACGATGCGA TTCAGATTAT GGGTGGGCTT 
GGTTATACTG ACGAAGCCCG TGTCTCCCGC TTCTGGCGCG ATGTTCGCTG CGAACGTATC 
GGTGGCGGCA CGGATGAAAT TATGATCTAT GTGGCAGGAC GCCAGATTCT GAAAGACTAT 
CAGAACAAGT AA
 
Protein sequence
MDFSLTEEQE LLLASIRELI TSNFPEEYFR TCDQTGTYPK EFMQALAENG ISMLGVPEEF 
GGIPADYVTQ MLALMEISKC GAPAFLITNG QCIHSMRRFG SAEQLRKTAE STLATGDPAY 
ALALTEPGAG SDNNSATTTW TRKNGKVYLN GQKTFITGAK EYPYMLVLAR DTEPKDPKKA 
FTLWWVDSNK PGIKINPLHK IGWHMLSTCE VYLDNVEVDE SDRVGEEGMG FLNVMYNFEM 
ERLINAARST GFAECAFEDA ARYANQRIAF GKPIGHNQMI QEKLALMAIK IENMRNMVLK 
IAWQADREES LRTSAALAKL YCARTAMEVI DDAIQIMGGL GYTDEARVSR FWRDVRCERI 
GGGTDEIMIY VAGRQILKDY QNK