Gene SeD_A1918 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1918 
Symbol 
ID6874076 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp1854713 
End bp1856086 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content54% 
IMG OID642785041 
Productmultidrug efflux protein 
Protein accessionYP_002215709 
Protein GI198243327 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00462926 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones85 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAGAAGT ATACCAGTGA AGCGCGTCAG TTATTAGCGT TAGCGATACC GGTGATCCTT 
GCGCAAGTGG CACAGACCGC AATGGGATTC GTCGATACCG TCATGGCGGG AGGCTATAGC
GCTACGGACA TGGCTGCCGT CGCTATCGGC ACCTCTATCT GGCTTCCCGC CATTTTGTTT
GGTCACGGCT TACTGCTGGC CTTGACGCCT GTGATTGCGC AACTCAATGG CTCCGGCCGT
CGTGAGCGTA TCGCGCATCA GGTTCGACAA GGGTTCTGGC TGGCGGGCTT TGTCTCCGTG
CTGGTGATGA TCGTCCTGTG GAATGCCGGA TACATTATCC GCTCTATGCA TAATATTGAT
CCGGCGCTGG CCGATAAAGC CGTGGGTTAT CTTCGCGCGC TGCTGTGGGG CGCGCCAGGA
TACCTTTTCT TTCAGGTAGC GCGAAACCAG TGCGAAGGTC TGGCCAAAAC CAAACCGGGT
ATGGTGATGG GATTTTTGGG CCTGCTGGTG AATATTCCGG TGAACTATAT TTTTATCTAT
GGCCATTTTG GTATGCCGGA ACTCGGCGGT ATCGGCTGCG GCGTTGCGAC TGCGGCGGTC
TATTGGGTGA TGTTTATCGC CATGCTTTCT TACATTAAAC ACGCGCGTTC AATGCGTGAT
ATTCGTAATG AAAAAGGCTT TGGCAAACCT GATAGCGTCG TCATGAAGCG CCTGATTCAA
CTGGGGTTGC CGATTGCGCT GGCGCTGTTC TTTGAAGTGA CGTTATTTGC GGTCGTTGCG
CTGCTGGTTT CGCCATTAGG TATTGTGGAT GTCGCCGGTC ATCAGATTGC GCTTAACTTT
AGCTCGCTGA TGTTCGTACT GCCGATGTCG CTGGCTGCGG CGGTAACGAT TCGAGTGGGT
TATCGTCTGG GCCAGGGCTC AACGCTGGAT GCGCAAACCG CAGCGCGTAC CGGTTTAGGC
GTCGGCATTT GTATGGCTGT GGTTACCGCT ATTTTTACCG TTACTCTGCG TAAGCATATT
GCTTTGCTCT ACAATGACAA CCCTGAGGTC GTGGCGCTTG CCGCGCAATT AATGCTGCTC
GCTGCGGTTT ACCAGATTTC CGACTCTATA CAGGTTATCG GCAGCGGTAT TCTGCGCGGT
TATAAAGATA CGCGTTCCAT CTTTTTTATC ACCTTTACCG CCTACTGGGT GTTAGGTTTA
CCCAGCGGTT ATATCCTGGC GTTAACGGAT TTGGTGGTGG ATCGTATGGG ACCGGCAGGC
TTCTGGATGG GGTTCATCAT CGGCCTGACC TCGGCGGCGG TGTTAATGAT GCTACGGATG
CGCTATCTAC AACGTCAGCC GTCCGCCATC ATTTTGCAGC GCGCTGCGCG ATAA
 
Protein sequence
MQKYTSEARQ LLALAIPVIL AQVAQTAMGF VDTVMAGGYS ATDMAAVAIG TSIWLPAILF 
GHGLLLALTP VIAQLNGSGR RERIAHQVRQ GFWLAGFVSV LVMIVLWNAG YIIRSMHNID
PALADKAVGY LRALLWGAPG YLFFQVARNQ CEGLAKTKPG MVMGFLGLLV NIPVNYIFIY
GHFGMPELGG IGCGVATAAV YWVMFIAMLS YIKHARSMRD IRNEKGFGKP DSVVMKRLIQ
LGLPIALALF FEVTLFAVVA LLVSPLGIVD VAGHQIALNF SSLMFVLPMS LAAAVTIRVG
YRLGQGSTLD AQTAARTGLG VGICMAVVTA IFTVTLRKHI ALLYNDNPEV VALAAQLMLL
AAVYQISDSI QVIGSGILRG YKDTRSIFFI TFTAYWVLGL PSGYILALTD LVVDRMGPAG
FWMGFIIGLT SAAVLMMLRM RYLQRQPSAI ILQRAAR