| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1886 |
|---|
| Symbol | rnfD |
|---|
| ID | 6874371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1826472 |
|---|
| End bp | 1827530 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642785011 |
|---|
| Product | electron transport complex protein RnfD |
|---|
| Protein accession | YP_002215679 |
|---|
| Protein GI | 198245875 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
|---|
| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0115078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTATTCA GAATCGCAAG CTCGCCTTAT ACCCATAACC AGCGCCAGAC ATCGCGAATC
ATGTTACTGG TAGTAATCGC CGCTCTGCCG GGGATTGCCG CGCAGACGTG GTTTTTTGGT
TGGGGAACGC TTTTCCAGAT CGTTCTGGCA GCCATCACAG CGCTCGTCGC GGAAGCCATT
GTCCTCAGGC TGCGCAAACA ATCGGTCGCC AGTCACCTGC AGGATTATTC CGCGTTATTG
ACGGGGCTTT TGCTGGCGGT CAGCATCCCT CCGCTTGCGC CATGGTGGAT GGTCGTGCTG
GGAACCGGAT TCGCCATTAT TATCGCTAAA CAGTTATATG GCGGGCTGGG ACAAACCCCC
TTTAATCCGG CCATGATCGG TTACGTGGTG CTATTAATTT CCTTTCCGGT GCAAATGACA
AGCTGGTTGC CGCCTTATGA AATAGCCGCA ACAACGCCCG ATATGCTGGA CACGTTGCGG
ATGATTTTTA CCGGGCATAC CGCCAGCGGC GGCGATATGA CGCTGCTACG TATCGGTATT
GACGGTATCA GCCAGGCGAC GCCGCTGGAT ACGTTTAAAA CGTCCTTGCG CGCCGGGCAC
TCCGTTGAGC AAATCATGCA GTACCCGATA TACAGCGGCG CGCTGGCTGG CGTGGGCTGG
CAGTGGGTTA ACCTCGCCTG GCTTGTCGGC GGCGTATTCC TGCTGTGGCA AAAAGCTATC
CGCTGGCATA TCCCGGTCAG TTTTCTGCTC ACGCTGGCGC TATGCGCCGC GTTAGGTTGG
CTTTTCTCGC CCGCTACGCT GGCCTCGCCG CAGCTTCATC TGCTGTCAGG CGCCACCATG
CTGGGCGCAT TTTTTATCTT AACGGATCCG GTTACCGCCT CCACGACCAA CCGTGGACGT
TTAATTTTCG GCGCGCTGGC TGGGGTATTA GTGTGGCTGA TTCGTAGCTT CGGCGGCTAT
CCGGACGGCG TTGCTTTTGC TGTCCTGTTG GCGAATATCA CGGTTCCTCT GATCGACTAC
TACACGCGCC CCCGCGTCTA TGGACATCGC AAAGGATAA
|
|---|
| Protein sequence | MVFRIASSPY THNQRQTSRI MLLVVIAALP GIAAQTWFFG WGTLFQIVLA AITALVAEAI
VLRLRKQSVA SHLQDYSALL TGLLLAVSIP PLAPWWMVVL GTGFAIIIAK QLYGGLGQTP
FNPAMIGYVV LLISFPVQMT SWLPPYEIAA TTPDMLDTLR MIFTGHTASG GDMTLLRIGI
DGISQATPLD TFKTSLRAGH SVEQIMQYPI YSGALAGVGW QWVNLAWLVG GVFLLWQKAI
RWHIPVSFLL TLALCAALGW LFSPATLASP QLHLLSGATM LGAFFILTDP VTASTTNRGR
LIFGALAGVL VWLIRSFGGY PDGVAFAVLL ANITVPLIDY YTRPRVYGHR KG
|
|---|
| |