| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1698 |
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| Symbol | hrpA |
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| ID | 6872870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 1633353 |
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| End bp | 1637273 |
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| Gene Length | 3921 bp |
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| Protein Length | 1306 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642784839 |
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| Product | ATP-dependent RNA helicase HrpA |
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| Protein accession | YP_002215507 |
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| Protein GI | 198245776 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.615295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.00323043 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCTGCCCA AGAGCTTTAT GACTGAACAA TCTACGTTGA CGCTTCAGGT GTTACAGCAG
CGGCTGGATG CACTGATGCT GCGCGACAAA CAGCGCTTTG CGCGCCGCCT GCATGGCGTA
AAGAAAGTAA AAAATCCTGA TGCGCAACAG GCCATTTTCC AGACGATGGC GAAAGAAATT
GAACAGGCTG TGGCGCAAGT CGCCCTCCGT GAAGCGGCGC GCCCCTCAAT CACTTATCCG
CAAAATCTGC CTGTTAGCCA GAAGAAACAG GACATTCTGG AAGCGGTCCG CGATCATCAG
GTAGTGATCG TAGCAGGGGA AACCGGTTCC GGTAAAACCA CCCAGTTGCC GAAAATTTGT
ATGGAACTGG GACGTGGAAT TAAAGGACTT ATTGGTCATA CTCAGCCGCG TCGCCTGGCG
GCGCGCACCG TCGCTAACCG CATTGCCGAA GAGTTGCAAA CGGAGCCAGG CGGCTGCATC
GGCTATAAAG TTCGTTTCAG CGATCATGTC AGTAGCAACA CCATGGTCAA ACTGATGACG
GACGGTATCC TGCTGGCGGA AATCCAGCAG GACAGACTAT TGATGCAGTA TGACACCATC
ATTATTGATG AAGCGCATGA ACGCAGCCTG AATATTGACT TCTTGCTCGG CTATCTGAAA
GAGCTTCTGC CGCGTCGCCC CGATCTGAAA GTGATTATTA CCTCTGCGAC CATCGACCCG
GAACGCTTCT CGCGCCACTT TAATAACGCG CCGATTATCG AAGTCTCTGG CCGAACGTAT
CCCGTAGAAG TTCGTTATCG CCCCATCGTG GAAGAGGCTG ACGACACTGA ACGCGATCAG
CTACAGGCAA TTTTCGACGC TGTTGATGAA CTGGGGCGTG AAAGTCCCGG CGATATCCTG
ATTTTTATGA GCGGAGAGCG GGAAATCCGC GATACCGCCG ATGCCCTGAA CAAGCTGAAC
TTACGGCATA CCGAAGTGTT GCCGCTGTAT GCACGCTTGT CGAACAGCGA ACAGAACCGC
GTTTTCCAGT CGCACAGCGG ACGCCGTATC GTGCTGGCGA CTAACGTGGC GGAAACCTCG
CTGACGGTGC CGGGTATCAA GTATGTGATC GATCCTGGCA CTGCGCGCAT CAGCCGCTAC
AGCTACCGCA CTAAAGTGCA GCGCCTGCCG ATTGAACCGA TCTCACAGGC TTCCGCCAAT
CAGCGTAAAG GGCGTTGCGG ACGCGTATCG GAAGGGATTT GCATTCGTCT GTATTCGGAA
GATGACTTTT TGTCACGTCC GGAATTTACC GACCCGGAAA TTCTACGTAC CAACCTGGCG
TCGGTTATTT TGCAGATGAC CGCACTGGGG CTGGGTGACA TCGCCGCCTT CCCGTTTGTT
GAAGCGCCGG ATAAGCGCAA TATTCAGGAT GGCGTGCGTT TGTTGGAAGA GCTGGGGGCG
ATTACCGCCG ACGAACAGCA AACGGCATAT AAGCTGACGC CGCTGGGCCG ACAATTATCC
CAGTTGCCGG TCGACCCGCG CCTGGCGCGT ATGGTTCTGG AAGCGCAAAA GCATGGCTGT
GTGCGCGAAG CGATGATCAT TACTTCCGCA CTCTCTATTC AGGATCCGCG CGAGCGCCCA
GTGGATAAGC AGCAGGCTTC CGATGAGAAA CACCGGCGCT TTCATGATAA GGAATCCGAT
TTTCTGGCGT TTGTTAACCT GTGGAATTAC CTCGGCGAGC AACAAAAGGC CCTGTCGTCG
AATCAATTCC GCCGTCTGTG TCGCACCGAC TATCTGAACT ATTTACGCGT GCGTGAGTGG
CAGGATATCT ATACCCAACT GCGTCAGGTG GTAAAAGAGC TGGGGATTCC GGTAAACAGC
GAACCCGCAG AGTACCGGGA AATTCACGTT GCGTTGTTAA CGGGGCTGTT GTCGCATATC
GGGATGAAAG ATGCCGATAA ACAAGAGTAC ACCGGAGCGC GTAACGCCCG ATTCTCTATT
TTCCCCGGAT CCGGTTTATT CAAAAAACCG CCGAAATGGA CAATGGTCGC AGAACTGGTG
GAGACCAGCC GTTTGTGGGG GCGCATCGCT GCCCGCATTG AGCCAGAATG GGTGGAACCG
GTAGCCCAGC ACCTGATTAA ACGTTCATAT AGCGAACCGC ACTGGGAGCG GGCGCAAGGC
GCGGTGATGG CGACGGAAAA GGTTACTGTC TACGGTCTGC CGATTGTCGC CGCGCGCAAG
GTGAATTACA GCCAGATTGA CCCGGCGTTG TGTCGTGAGT TGTTTATCCG CCATGCGCTG
GTGGAGGGGG ACTGGCAAAC CCGTCATGCC TTCTTCCGTG AGAATCTGAA ATTGCGTGCG
GAAGTCGAGG AACTTGAGCA CAAATCTCGC CGCCGCGATA TCCTGGTGGA TGACGATACC
CTGTTTGAGT TTTATGACCA GCGTATTAGC CATGACGTTA TTTCCGCCCG CCACTTTGAT
AGTTGGTGGA AAAAAATCAG CCGCGAGACG CCGGATCTGC TCAACTTTGA AAAAAGTATG
CTGATTAAAG AAGGCGCGGA AAAAATCAGC AAACTGGATT ACCCGAATTT CTGGCACCAG
GGCAATCTCA AGCTGCGTTT GAGCTATCAG TTTGAACCGG GCGCGGATGC TGACGGCGTG
ACCGTCCATA TTCCGTTGCC GCTACTTAAC CAGGTTGACG AGAGCGGTTT TGAATGGCAG
ATCCCGGGGC TGCGCCGTGA ATTAGTGATT GCGCTGATTA AATCGTTGCC AAAACCGGTA
CGTCGCAACT TTGTTCCGGC GCCAAACTAT GCTGAAGCGT TTTTGGGTCG CGTAACGCCG
CTGGAGCTGC CGCTGCTGGA CGCTCTGGAG CGTGAACTGC GCCGGATGAC CGGCGTCACG
GTCGACCGGG AAGACTGGCA TTGGGATCAG GTGCCCGGGC ATCTGAAAAT CACGTTTCGC
GTGGTGAATG ACAAAAACAA GAAACTGCAG GAAGGGCGTT CGCTCGCCGA GCTTAAAAAT
GCGCTGAAAG GCAAAGTGCA GGAGACGCTC TCGGCGGTGG CGGATGACGG CATCGAGCAG
AGCGGGCTGC ATATCTGGAG TTTCGGCGAG CTGCCGGAAA GCTACGAACA GAAACGCGGT
AATTATAAAG TGAAGGCGTG GCCAGCGTTA GTGGATGAGC GTGACAGCGT CGCTATCAAA
TTGTTTGATA ATCCGCTGGA ACAACAACAG GCGATGTGGT GCGGTTTACG CCGTCTGCTG
TTGCTCAATA TTCCTTCACC GATTAAGTAT CTGCATGAGA AATTGCCGAA TAAAGCCAAG
CTGGGGCTGT ACTTTAACCC GTACGGCAAA GTACTGGAGT TGATTGATGA CTGTATCGCC
TGCGGGGTAG ATAAGCTGAT AGATGCCAAC GGCGGGCCGG TTTGGAGCGA AGCAGGTTTC
ACCGCGCTGC ACGAAAAGGT ACGCGCCGAG CTGAATGATA CTGTGGTGGA TATCGCGAAG
CAGGTTGAGC GGATCCTGAC GACCGTATTC AATATCAATA AGCGTCTGAA AGGGCGGGTG
GATATGAGCA TGGCGTTGGG GCTTTCCGAT ATCAAGGCGC AGATGAGCGG TCTGGTATAC
CGTGGTTTTG TGACTGGCAA CGGCTTTAAA CGTCTCGGCG ATACGCTGCG TTATCTGCAG
GCAATTGAAA AGCGGCTGGA GAAACTGGCT GTCGATCCGC ACCGCGATCG GGCGCAAATG
CTGAAAGTCG AAAGCGTCCA GCAGGCGTGG CAACAATGGA TAAATAAATT GCCTCCAGCG
CGTCGCGAAG ATGATGATGT TAAAGAGATC CGTTGGATGA TTGAAGAACT GCGTGTCAGT
TATTTCGCCC AACAGCTCGG TACGCCTTAT CCTATTTCCG ATAAGCGTAT TTTACAGGCC
ATGGATCAGA TTACGGCCTA A
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| Protein sequence | MLPKSFMTEQ STLTLQVLQQ RLDALMLRDK QRFARRLHGV KKVKNPDAQQ AIFQTMAKEI
EQAVAQVALR EAARPSITYP QNLPVSQKKQ DILEAVRDHQ VVIVAGETGS GKTTQLPKIC
MELGRGIKGL IGHTQPRRLA ARTVANRIAE ELQTEPGGCI GYKVRFSDHV SSNTMVKLMT
DGILLAEIQQ DRLLMQYDTI IIDEAHERSL NIDFLLGYLK ELLPRRPDLK VIITSATIDP
ERFSRHFNNA PIIEVSGRTY PVEVRYRPIV EEADDTERDQ LQAIFDAVDE LGRESPGDIL
IFMSGEREIR DTADALNKLN LRHTEVLPLY ARLSNSEQNR VFQSHSGRRI VLATNVAETS
LTVPGIKYVI DPGTARISRY SYRTKVQRLP IEPISQASAN QRKGRCGRVS EGICIRLYSE
DDFLSRPEFT DPEILRTNLA SVILQMTALG LGDIAAFPFV EAPDKRNIQD GVRLLEELGA
ITADEQQTAY KLTPLGRQLS QLPVDPRLAR MVLEAQKHGC VREAMIITSA LSIQDPRERP
VDKQQASDEK HRRFHDKESD FLAFVNLWNY LGEQQKALSS NQFRRLCRTD YLNYLRVREW
QDIYTQLRQV VKELGIPVNS EPAEYREIHV ALLTGLLSHI GMKDADKQEY TGARNARFSI
FPGSGLFKKP PKWTMVAELV ETSRLWGRIA ARIEPEWVEP VAQHLIKRSY SEPHWERAQG
AVMATEKVTV YGLPIVAARK VNYSQIDPAL CRELFIRHAL VEGDWQTRHA FFRENLKLRA
EVEELEHKSR RRDILVDDDT LFEFYDQRIS HDVISARHFD SWWKKISRET PDLLNFEKSM
LIKEGAEKIS KLDYPNFWHQ GNLKLRLSYQ FEPGADADGV TVHIPLPLLN QVDESGFEWQ
IPGLRRELVI ALIKSLPKPV RRNFVPAPNY AEAFLGRVTP LELPLLDALE RELRRMTGVT
VDREDWHWDQ VPGHLKITFR VVNDKNKKLQ EGRSLAELKN ALKGKVQETL SAVADDGIEQ
SGLHIWSFGE LPESYEQKRG NYKVKAWPAL VDERDSVAIK LFDNPLEQQQ AMWCGLRRLL
LLNIPSPIKY LHEKLPNKAK LGLYFNPYGK VLELIDDCIA CGVDKLIDAN GGPVWSEAGF
TALHEKVRAE LNDTVVDIAK QVERILTTVF NINKRLKGRV DMSMALGLSD IKAQMSGLVY
RGFVTGNGFK RLGDTLRYLQ AIEKRLEKLA VDPHRDRAQM LKVESVQQAW QQWINKLPPA
RREDDDVKEI RWMIEELRVS YFAQQLGTPY PISDKRILQA MDQITA
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