| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1653 |
|---|
| Symbol | |
|---|
| ID | 6874976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1594995 |
|---|
| End bp | 1596608 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642784797 |
|---|
| Product | periplasmic murein peptide-binding protein |
|---|
| Protein accession | YP_002215465 |
|---|
| Protein GI | 198243089 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 0.0552012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCATT CTGTTTCAGT AACCTGTTGT GCGCTGTTGG TTAGCAGCTT TTCCCTGGCA
TATGCTGCGG ATGTTCCCGG CGGAACGGTA CTGGCAGAAA AACAAGAACT GGTGCGTCAT
ATCAAAGATG AGCCCGCTTC GTTAGATCCA GCGAAAGCCG TTGGGCTGCC TGAAATTCAG
GTGATCCGCG ATCTGTTTGA AGGGCTGGTT AACCAGAACG AAAAGGGTGA AATTATCCCT
GGCGTCGCCA GCCAGTGGAA GAGCAATGAT AATCGTATCT GGACGTTTAC GTTGCGGGAT
AATGCGCAAT GGGCCGATGG AACGCCGGTG ACCGCCCAGG ATTTTGTCTA TAGCTGGCAA
CGTCTCGTTG ATCCCAAAAC GCTTTCCCCC TTCGCCTGGT TTGCCGCGCT GGCTGGCATC
ACTAATGCGC AAGCCATTAT CGACGGTAAA GTCACGCCGG ATCAGCTTGG CGTCAGTGCC
GTGGACGCGC ACACTTTGCG TGTTCAGCTT GACAAGCCGT TGCCCTGGTT TGCCAGTCTG
ACCGCCAGTT TTGCCTTTTA TCCGGTCCAA AAAGCGAATG TCGAAAGCGG CAAAGACTGG
ATGAAGCCGG GAAAACTGAT TGGCAATGGC GCGTATGTGC TTAAAGAGCG CGTGGTAAAT
GAAAAACTGG TGGTCGTGCC TAATACGCAT TACTGGGATA ACGCGAAAAC GGTACTGCAA
AAAGTAACAT TTTTACCCAT TAACCAAGAA TCGGCTGCGA CGAAACGTTA CCTTGCCGGT
GATATTGATA TCACCGAATC TTTCCCTAAA AATATGTACC AGAAATTATT GAAGGATATT
CCAGGGCAAG TTTATACGCC GCCGCAATTA GGGACTTATT ATTATGCGTT TAATACGCAG
AAAGGGCCGA CGGCGGATTC CCGCGTTCGT CTGGCGCTAA GTATGACCAT TGATCGCCGT
TTGATGGCGG AAAAAGTCTT AGGTACCGGT GAAAAACCGG CCTGGCATTT TACACCGGAT
GTCACGGCAG GATTTAAGCC CGATCCTTCA CCGTTTGAAC AAATGAGCCA GGAAGAACTT
AACGCCCAGG CGAAAACATT GCTGCGTGCA GCAGGCTACG GATCGCAGAA GCCGCTTAAA
TTAACTCTGC TTTACAATAC CTCAGAAAAC CATCAGAAAA TCGCGATTGC GGTGGCGTCA
ATGTGGAAGA AAAATCTGGG GGTGGATGTG AAATTGCAAA ACCAGGAGTG GAAAACGTAT
ATCGACAGCC GGAATACAGG TAATTTTGAT GTTATTCGCG CCTCCTGGGT GGGTGATTAC
AACGAACCGT CGACTTTCTT ATCCTTATTA ACGTCCACGC ATACGGGGAA TATTTCACGC
TTTACTAATC CGACTTATGA CAAAATCCTG ACGCAAGCGA CGATGGAAAA TACCGCCGAA
GCGCGTAACG CGGATTACAA TGCAGCGGAG AAAATTTTAA CGGAACAAGC GCCTATAGCG
CCTATTTATC AGTATACCAA TGGCCGGTTA ATTAAACCGT GGGTAAAGGG ATACCCCATT
ACTAACCCGG AAGATGTGGC CTATAGCCGT ACAATGTATA TCGTGAAGCA CTGA
|
|---|
| Protein sequence | MRHSVSVTCC ALLVSSFSLA YAADVPGGTV LAEKQELVRH IKDEPASLDP AKAVGLPEIQ
VIRDLFEGLV NQNEKGEIIP GVASQWKSND NRIWTFTLRD NAQWADGTPV TAQDFVYSWQ
RLVDPKTLSP FAWFAALAGI TNAQAIIDGK VTPDQLGVSA VDAHTLRVQL DKPLPWFASL
TASFAFYPVQ KANVESGKDW MKPGKLIGNG AYVLKERVVN EKLVVVPNTH YWDNAKTVLQ
KVTFLPINQE SAATKRYLAG DIDITESFPK NMYQKLLKDI PGQVYTPPQL GTYYYAFNTQ
KGPTADSRVR LALSMTIDRR LMAEKVLGTG EKPAWHFTPD VTAGFKPDPS PFEQMSQEEL
NAQAKTLLRA AGYGSQKPLK LTLLYNTSEN HQKIAIAVAS MWKKNLGVDV KLQNQEWKTY
IDSRNTGNFD VIRASWVGDY NEPSTFLSLL TSTHTGNISR FTNPTYDKIL TQATMENTAE
ARNADYNAAE KILTEQAPIA PIYQYTNGRL IKPWVKGYPI TNPEDVAYSR TMYIVKH
|
|---|
| |