Gene SeD_A1652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1652 
Symbol 
ID6874139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1594077 
End bp1594805 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content58% 
IMG OID642784796 
Productmurein peptide amidase A 
Protein accessionYP_002215464 
Protein GI198245522 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2866] Predicted carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.609177 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value0.0125995 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGTCA CCCGCCCCCG TGCCGAGCGC GGCGCATTTC CGCCAGGCAC TGAACATTAT 
GGACGTTCGC TACTTGGCGC GCCGCTAATC TGGTTTCCGG CGCCTGCCGC CGATCGCGAA 
AGCGGCCTGA TACTGGCTGG CACCCACGGG GATGAAACCT CATCCGTGGT GACGCTCTCC 
TGTGCGTTAC GCACCTTAAA TCCAACCCTT CGCCGTCATC ATGTCGTACT TGCCGTTAAT 
CCTGATGGCT GTCAACTGGG GTTAAGGGCA AATGCGAATG GCATTGATCT AAACCGTAAC 
TTTCCCGCCG CCAACTGGAA AGCGGGTGAG ACAGTTTATC GCTGGAATAG CCGCGCGCAA 
GAGCGTGATG TCGTGCTGCT AACCGGCGAC CATCCCGGCT CAGAACCGGA AACCCAGGCG 
CTTTGCCAGT TAATTCATCG ACTCCAACCC GCCTGGGTCG TCTCTTTTCA CGATCCGCTA 
GCCTGCATTG AAGATCCACG TCGCAGCGAG CTAGGCGAGT GGCTGGCCGA TGCGTTTGCG 
TTGCCGCTGG TAACCAGCGT AGGTTACGAA ACGCCCGGTT CGTTTGGCAG CTGGTGCGCC 
GACCTCAACC TGCACTGCAT TACCGCCGAG TTTCCCCCTG TTTCTGCCGA TGAAGCCAGC 
GAAAAATACT TGCTGGCTAT GTCGAATCTG CTCCGCTGGC ATCCTAAAGA TGGAGTTGAC 
CCGTCGTAA
 
Protein sequence
MTVTRPRAER GAFPPGTEHY GRSLLGAPLI WFPAPAADRE SGLILAGTHG DETSSVVTLS 
CALRTLNPTL RRHHVVLAVN PDGCQLGLRA NANGIDLNRN FPAANWKAGE TVYRWNSRAQ 
ERDVVLLTGD HPGSEPETQA LCQLIHRLQP AWVVSFHDPL ACIEDPRRSE LGEWLADAFA 
LPLVTSVGYE TPGSFGSWCA DLNLHCITAE FPPVSADEAS EKYLLAMSNL LRWHPKDGVD 
PS