| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1408 |
|---|
| Symbol | |
|---|
| ID | 6871388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1377272 |
|---|
| End bp | 1379326 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642784574 |
|---|
| Product | ATP-dependent protease |
|---|
| Protein accession | YP_002215244 |
|---|
| Protein GI | 198242377 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
|---|
| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.104115 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.000644227 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCGG TGATGACAGC AGGGAACGGA CGCGGGGAGG GAAGCAGTAA TAGCTGGTAT
TCCATCAGGG CTGCAGCCAA TAACACGGCG GAAGTCCGCA TTTATGACGA GATTGGTGGA
TGGGGAATTT CGGCTCGCTG GTTTGCAGAA GAACTGGCTG CACTGGGACA GATTAACCGG
ATAAATCTGC ATATTCATTC ACCTGGCGGA GCAGTACTGG ACGGAATAGC CATTTATAAC
CTCCTGAAAA ATCATCCGGC GCAAAAAACG GTGTATATCG ATGGAATGGC CTGCTCAATG
GCATCCGCTA TTGCGATGGT AGGTAATCCC ATCATTATGC CGGAAAACGC CATGATGATG
ATTCATAAGC CGCGCGGAGT GGCGGGGGGT GAGGCGGAGG ATATCCGGGA ATATGCTGAC
CTGCTTGACA AGATCGAAAG CGTCATTATC CCCATCTATA CCGAAAAAAC TGGAAAAACG
CCTGAAGATA TTGCTGCCAT GCTGGCAAAG GAGACCTGGA TGAGCGGCGC GGAGTGCGTC
AGTGAAGGGT TTGCCGACAA ACTGATACAG CCTGTAAAAG CAATGGCCTG TATTCATTCA
AAACGTGTTG AGGAGTTTGA GCATATGCCA CAGAGCATTA AAGGTATGAT TATCGCCCCG
CAGGGCAATG CAGGCGCGCA ACCGCAGCCA CAGGCAAAAG CCCCTGAGTC ACAGATTCAG
TCGCAGGCTC AGTCGCTGGT GACTGTAGAT GAAAATGCCA TTCGCGCACG CCTGCAGGAA
GAACAGCGTA ACCGTATCAC CGGCATTCAG AATGTGTTTT CACTTTCCGG CGATCGTTAT
GCCTCGCTGA TGGCAAAGTG CATTGCTGAT GTGGATTGCT CTCTGGAAAT GGCGAAGGAC
AGACTGTTGG CCGAGATGGC GAAAGGTATT ACGCCGACTA ACCAGCTGAA CGGTCCGCAG
AATCGCGCAG AGTTTCATGC CGGGATGTAT ACCGGAAACG GTAATATTAC CGGCGACGCC
GTTCGCGCTG CCGTGATGGC CCGCGCAGGC TATGAAGAAG CGCAGAAGGA TAACCCGTAC
AACTGTATGA CCCTGCGTGA ACTGGCGCGA ATTTCGCTGG TGGCGAGGGG TACAGGCGTG
TCCAGCATGA ATCCCATGCA GATGATCGGC ATGGCATTTA CGCACAGCAC CTCCGATTTC
GGTAACATTC TGCTGGATGT TGCAAACAAG TCCATTCTGC AGGGCTGGCA GGAAGCGCCG
GAAACCTTCG ATGCCTGGAC CAAAAAAGGA CAGTTGTCTG ATTTCAGGAT TGCGCACCGT
GTGGGTATGG GGGGATTCAG TTCACTGCGT CAGGTTCGTG AAGGAGCGGA ATACAAATAC
GTCACCACAG GGGATAAACA GGCGACCATT GCGCTCGCTA CCTATGGGGA GCTGTTCAGC
ATTACCCGCC AGGCCATCAT CAATGATGAT ATGAATATGC TGACGGATGT CCCGATGAAG
CTGGGACGTG CGGCAAAAGC CACCATTGCC GATCTGGTTT ATGACGTTCT CATCAGTAAC
CAGAAACTGT CCAGTGATAA TGTGGCGCTG TTTGACAAGA CGAAACACGC AAACGTCCTT
GAAAAAGCCG TTATGGATGT GGCGTCCCTG GATAAAGCGC GCCAGCTAAT GCGGATGCAG
AAAGAGGGCG ATCGCCACCT CAATATCCGT CCGGCATTTG TACTGGTGCC GACGGCGATG
GAGTCTGTTT CAAATCAGGT GATTAAATCT GTCAGTGTCA AGGGGGCGGA TATTAACGCC
GGGATCATTA ACCCGGTGAA AGATTTCGCC ACGGTGATCG CGGAGCCTCG TCTTGATGAC
GCCAGTCAGT CCACTTTCTA TCTTACTGCA GCAAAAGGCA GCGATACCGT TGAGGTGGCT
TACCTTAACG GCGTGGATGA GCCGTATATC GACCAGCAGG AAGGATTCAC GGTGGATGGC
GTAACCACGA AAGTTCGTAT TGATGCGGGC GTTGCGCCGG TGGATTATCG CGGCATGGTG
AAATGCACCG TATAA
|
|---|
| Protein sequence | MPPVMTAGNG RGEGSSNSWY SIRAAANNTA EVRIYDEIGG WGISARWFAE ELAALGQINR
INLHIHSPGG AVLDGIAIYN LLKNHPAQKT VYIDGMACSM ASAIAMVGNP IIMPENAMMM
IHKPRGVAGG EAEDIREYAD LLDKIESVII PIYTEKTGKT PEDIAAMLAK ETWMSGAECV
SEGFADKLIQ PVKAMACIHS KRVEEFEHMP QSIKGMIIAP QGNAGAQPQP QAKAPESQIQ
SQAQSLVTVD ENAIRARLQE EQRNRITGIQ NVFSLSGDRY ASLMAKCIAD VDCSLEMAKD
RLLAEMAKGI TPTNQLNGPQ NRAEFHAGMY TGNGNITGDA VRAAVMARAG YEEAQKDNPY
NCMTLRELAR ISLVARGTGV SSMNPMQMIG MAFTHSTSDF GNILLDVANK SILQGWQEAP
ETFDAWTKKG QLSDFRIAHR VGMGGFSSLR QVREGAEYKY VTTGDKQATI ALATYGELFS
ITRQAIINDD MNMLTDVPMK LGRAAKATIA DLVYDVLISN QKLSSDNVAL FDKTKHANVL
EKAVMDVASL DKARQLMRMQ KEGDRHLNIR PAFVLVPTAM ESVSNQVIKS VSVKGADINA
GIINPVKDFA TVIAEPRLDD ASQSTFYLTA AKGSDTVEVA YLNGVDEPYI DQQEGFTVDG
VTTKVRIDAG VAPVDYRGMV KCTV
|
|---|
| |