Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1293 |
Symbol | |
ID | 6875684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1278040 |
End bp | 1278762 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642784463 |
Product | DNA-binding transcriptional activator SdiA |
Protein accession | YP_002215136 |
Protein GI | 198243442 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.746399 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.0000202879 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGGAAA ATGATTTCTT CACCTGGCGA CGCGCAATGT TGTTACGCTT TCAGGAGATG GCGGCAGCAG AGGATGTTTA TACTGAATTG CAATATCAGA CACAGCGGCT GGAATTTGAT TATTATGCCC TGTGTGTTCG TCATCCCGTC CCCTTTACCC GGCCTAAAAT ATCGCTTCGT ACCACTTATC CTCCGGCGTG GGTAACGCAT TATCAGTCCG AAAACTATTT CGCGATCGAT CCGGTATTAA AGCCGGAAAA TTTCAGGCAG GGTCATTTAC ATTGGGATGA CATGCTATTT CATGAAGCGC AGGCGATGTG GGATGCCGCC CAGCGTTTCG GATTACGCAG AGGCGTAACC CAGTGTGTGA TGTTGCCGAA CCGGGCGCTG GGCTTTTTAT CTTTCTCCCG TAGCAGTTTA CGCTGCTCCT CGTTTACCTA CGATGAAGTG GAGCTGAGGT TACAACTGCT GGCGCGGGAG AGTCTTTCGG CGCTGACAAG ATTTGAAGAC GACATGGTGA TGGCGCCTGA GATGCGTTTC AGTAAACGTG AGAAAGAGAT TCTGAAGTGG ACGGCGGAAG GGAAGACCTC ATCAGAGATC GCCATTATTC TGTCGATTTC TGAAAATACC GTTAACTTCC ATCAGAAAAA TATGCAGAAG AAATTCAATG CGCCAAATAA AACACAGATT GCCTGCTACG CTGCGGCGAC AGGTCTGATA TGA
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Protein sequence | MQENDFFTWR RAMLLRFQEM AAAEDVYTEL QYQTQRLEFD YYALCVRHPV PFTRPKISLR TTYPPAWVTH YQSENYFAID PVLKPENFRQ GHLHWDDMLF HEAQAMWDAA QRFGLRRGVT QCVMLPNRAL GFLSFSRSSL RCSSFTYDEV ELRLQLLARE SLSALTRFED DMVMAPEMRF SKREKEILKW TAEGKTSSEI AIILSISENT VNFHQKNMQK KFNAPNKTQI ACYAAATGLI
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