| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1261 |
|---|
| Symbol | fliR |
|---|
| ID | 6875381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 1251974 |
|---|
| End bp | 1252768 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642784432 |
|---|
| Product | flagellar biosynthesis protein FliR |
|---|
| Protein accession | YP_002215105 |
|---|
| Protein GI | 198244152 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
|---|
| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0910889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACAGG TTACAAGCGA GCAATGGCTA TACTGGCTGC ATCTCTATTT CTGGCCTTTG
CTGCGCGTAC TGGCGCTGAT TTCAACGGCG CCCATTCTCA GCGAGCGCGC TATTCCCAAG
CGGGTAAAAC TGGGGTTGGG AATAATGATT ACCCTTGTTA TCGCGCCGTC GCTACCGGCA
AACGATACGC CGCTTTTTTC TATTGCCGCC TTATGGCTGA CGATGCAACA AATTCTGATC
GGTATTGCGC TGGGATTTAC CATGCAATTC GCCTTTGCGG CGGTGCGTAC CGCAGGTGAG
TTTATCGGTC TGCAAATGGG GCTTTCCTTT GCCACCTTCG TCGACCCGGG CAGCCACCTG
AATATGCCGG TTCTGGCGCG TATTATGGAT ATGCTCGCCA TGCTACTGTT TCTCACCTTT
AATGGCCATT TGTGGCTTAT TTCGCTGTTG GTCGATACCT TCCACACTCT GCCCATCGGT
AGTAACCCGG TGAACAGTAA TGCATTTATG GCGCTCGCCA GGGCCGGAGG GCTCATTTTC
TTAAACGGAC TGATGCTGGC ATTGCCGGTC ATTACCCTCC TGCTTACGCT CAACCTGGCG
CTGGGGCTAT TAAACCGCAT GGCGCCGCAG CTCTCGATAT TTGTTATCGG TTTCCCGCTT
ACCCTCACCG TCGGCATTAT GCTGATGGCC GCGCTAATGC CATTAATTGC GCCGTTTTGC
GAACATTTAT TCAGCGAAAT TTTCAATTTG CTTGCTGATA TTGTTAGCGA GATGCCGATA
AATAATAACC CATAA
|
|---|
| Protein sequence | MIQVTSEQWL YWLHLYFWPL LRVLALISTA PILSERAIPK RVKLGLGIMI TLVIAPSLPA
NDTPLFSIAA LWLTMQQILI GIALGFTMQF AFAAVRTAGE FIGLQMGLSF ATFVDPGSHL
NMPVLARIMD MLAMLLFLTF NGHLWLISLL VDTFHTLPIG SNPVNSNAFM ALARAGGLIF
LNGLMLALPV ITLLLTLNLA LGLLNRMAPQ LSIFVIGFPL TLTVGIMLMA ALMPLIAPFC
EHLFSEIFNL LADIVSEMPI NNNP
|
|---|
| |