| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1234 |
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| Symbol | |
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| ID | 6872076 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 1227373 |
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| End bp | 1229487 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642784413 |
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| Product | Vgr family type VI secretion system |
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| Protein accession | YP_002215086 |
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| Protein GI | 198242271 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.270466 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAACAG GATTACGTTT CACACTGGAG GTGGACGGCC TGCCATCGGA TGCGCTGGTC
GTGGAGTCCT TTCACCTGAG CCAGTCCCTT TCCACGTTAT TTTCCCTCGA TATCTCGCTG
GTCAGTCAGC AACTTCACAA CATTGAGTTT GCCCAGGTAC TGGAAAAACC GGCGCACCTG
AAAATCTGGC AGGGCACGGA GATACAGCGC CGGGTGAACG GCATAGTGAC CTGGTTTGAG
CAGGGGGAAA ACGACGGACA CCAGATGCTG TACAGCATGA AAGTTCGTCC GCCGGTGTGG
CGCGCCGCGC TGCGGCAGAA CTCGCGTATT TTCCAGAATG AAGACATAAA AAGCATTCTC
GGGACGATAC TGCAGGAAAA CGGCGTGACG GACTGGAGCC CGCTGTTCAG TGAGGCGCAT
CCGGCGCGGG AGTTCTGCGT GCAGTACAGC GAAACGGATT ACGACTTTCT GGCGCGGATG
GCGGCGGAGG AAGGTATTTT CTTTTACGAG GAACATGCGC AGACCAGCGA CGACCAGAGC
CTGGTGCTGT GCGACACGGT ACGTTTTCTG CCGGAAGCCT TTGAAATCCC CTGGAACCCG
AACACCCGTA CCGAGGTGAG CACGCCGTGC GTCAGCCAGT TCCGCCACAG CGCGCAAATC
CGCCCCTCTT CCGTCATCGG CAAGGACTAC ACCTTCAAAC GCCCCGGCTG GGCGGGCCGC
TTTGAGCACC AGGGCGAACA TCAGGATTAC CAGCGCACGC AGTATGAGGT CTTTGATTAT
CCGGGGCGCT TCAAGGACGG CCACGGTCAG AACTTCGCCC GCTGGCAGAT GGAAGGCTGG
CGTAATAATG CCGAAGTGGC GCAGGGGAAA AGCCGTTCGC CGGCGATATG GCCGGGACGG
CGTATTCAGC TGACGGAACA CCCGCAGGCG AGCCTGAACC GGGAATGGCA GGTGGTGAGC
AGCGATTTAC ACGGCAGCCA GCCGCAGGCG GCGGCGGGGC GCTCAGGTTC AGGGACAACG
CTGGACAATC ATTTTACGGT CATCCCGGCA GACAGAACAT GGCGGCCACG CCCGCTGCCC
AAACCATCAG TGGACGGCCC GCAGTCGGCG GTGGTCACCG GCCCGGAAGG GGAAGAAATC
TTCTGCGACG AACATGGCCG TGTACGGGTG AAATTTAACT GGGACCGGTA TAACCCGGCG
AACCAGGACA GCTCGTGCTG GATACGGGTG GTACAGGCGT GGGCGGGGCC GGGGTTCGGC
AACCTGGCGA TACCGCGCGT GGGGCAGGAA GTGATAGTGG ACTTCCTCAA CGGCGACCCG
GACCAGCCCA TCATCATGGG GCGCACCTAC CACCAGGAAA ACCGCTCACC GGGCAGCCTG
CCGGGCACCA AAACGCAGAT GACCATCCGC TCGAAAACCT ATAAAGGCAG CGGGTTTAAC
GAACTCATGT TTGATGATGC GACAGGGAAG GAGCGCGTGT ATATCCACGC GCAGAAGAAT
ATGAATACCG AGGTGCTGCG CAACCGCACC ACCGATGTGA CGAATAATCA TGCTGAAACC
ATTGGTAATA ACCAGGTGAT CGCCGTTACC AATAACCAAA TCCAGACCAT CGGCGTCAAC
CAGGTGGAGA AGGTGGGCAG TAACCAGGTG ATCAAGGTGG GTGCCAATCA GGTGGAAACG
GTGGGGATTG TCCGCGCCCT GAATGTGGGG CTGGCATACC AGACTACCGT GGGCGGCATC
ATGAATACCT CGGTGGCGCT GATGCAGTCT TCTGAGGTCG GGATCTTCAA ATCACTGAAT
GTGGGAATGA AATACAACGT CAATGTCGGG CGTAATGCCA GCGTTAACGT GGGCAACAGT
AAAACCGAAA GTACCGGTAA AACGGCGGTG TATTCCGCAG GCGAGCATCT GGAACTGGTG
TGTGGTGAAG CCCGTCTGGT GCTGACGAGC GACGGCGGTA TTTTTCTGAA CGGCAAACAT
ATTGAGTTGC AGGGCGTGGA CAGCTTAAAC GGGGATTCAA AGCTGATCAG CTGGAACTGT
GGGGTGAGCA AGAAGCCACC TGAAGCATCT GAACAGCAGG ATGACCCCGA TCCATCGGAT
CTGATCATGT ACTGA
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| Protein sequence | MSTGLRFTLE VDGLPSDALV VESFHLSQSL STLFSLDISL VSQQLHNIEF AQVLEKPAHL
KIWQGTEIQR RVNGIVTWFE QGENDGHQML YSMKVRPPVW RAALRQNSRI FQNEDIKSIL
GTILQENGVT DWSPLFSEAH PAREFCVQYS ETDYDFLARM AAEEGIFFYE EHAQTSDDQS
LVLCDTVRFL PEAFEIPWNP NTRTEVSTPC VSQFRHSAQI RPSSVIGKDY TFKRPGWAGR
FEHQGEHQDY QRTQYEVFDY PGRFKDGHGQ NFARWQMEGW RNNAEVAQGK SRSPAIWPGR
RIQLTEHPQA SLNREWQVVS SDLHGSQPQA AAGRSGSGTT LDNHFTVIPA DRTWRPRPLP
KPSVDGPQSA VVTGPEGEEI FCDEHGRVRV KFNWDRYNPA NQDSSCWIRV VQAWAGPGFG
NLAIPRVGQE VIVDFLNGDP DQPIIMGRTY HQENRSPGSL PGTKTQMTIR SKTYKGSGFN
ELMFDDATGK ERVYIHAQKN MNTEVLRNRT TDVTNNHAET IGNNQVIAVT NNQIQTIGVN
QVEKVGSNQV IKVGANQVET VGIVRALNVG LAYQTTVGGI MNTSVALMQS SEVGIFKSLN
VGMKYNVNVG RNASVNVGNS KTESTGKTAV YSAGEHLELV CGEARLVLTS DGGIFLNGKH
IELQGVDSLN GDSKLISWNC GVSKKPPEAS EQQDDPDPSD LIMY
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