| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1218 |
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| Symbol | |
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| ID | 6875550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 1208040 |
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| End bp | 1211501 |
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| Gene Length | 3462 bp |
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| Protein Length | 1153 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642784397 |
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| Product | hypothetical protein |
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| Protein accession | YP_002215070 |
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| Protein GI | 198244477 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.19667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGGT TTAAGGTTTC TGCCGCCTGG CTGCTGGCGC TGGCGTGGAT TTTGCTGCTG
GTATGGTTCT GGTGGAAAGG TCCGTCATGG ACGCTCTACG AGCAGCGCTG GCTGGCCCCG
CTGGCGAACC GCTGGCTGGC CACCGCCGCC TGGGGGTTGA TTGCGCTGAC GTGGCTGACC
GTCCGGGTCA TGAAGCGCCT GCAACTGCTG GAAAAACAGC AGCGCCAGCA ACGGGACGAG
GCGCAGGATC CGCTCAGCGT GGAACTGAAC ACCCAGCAAC GCTATCTCGA TCACTGGTTA
CTGCGTCTGC AACGCCATCT CGACAGCCGC CGCTATCTGT GGCAGCTACC GTGGTATATG
GTCACTGGCC CGGCGGGAAG CGGTAAAACC ACGCTGCTGC GCGAAGGGTA TCCGTCCGAC
ATTATTTATG CCCCGGAGGC GCTGCGGGGC GTGGAGCAGC GCCGGTATGT TATCCCGCAT
GTGGGAAAAC AGGCGGTGAT TTTTGACGCT GACGGCCTCC TCTTTGAGCA ACAGGATGCG
GATATACTGC ATCGCCGCCT GTGGACCCAT ATGCTGGACT GGCTGGCGCA AAAACGCGCC
CGGCAGCCGC TGAACGGCCT GATACTGACG CTGGATCTGC CCGATCTTCT GACCGCCGAC
AAGCCACGCC GTGAGCACCT GTTGCAGATC CTGCGCGGAC GTTTGCAGGA TATACGCCAG
CATCTTCACT GCCAGCTCCC CGTCTATGTG GTGCTGACCC GGCTGGATCT ACTGCACGGT
TTCGCCGCCC TGTTTCAGTC ACTGGACCGC AACGATCGCG ACGCCATTCT TGGCGTCACC
TTTACCCGTC ATGCCCATGA AAATGACGAC TGGCGTACAG AACTGAATGC CTTCTGGCAG
ACATGGGGCG AACAGTTGAA TAACGTCCTG CCGGAGCGGA TGTTAGCCCC CGGCTCCCGC
AGTTCCCTGT TCAGCTTTGT CCGCCAGATC CAGGGGGGCC GCGAGCCGCT GATCGCCCTG
CTGAACGGGC TGCTGGACGG GGAAAATATG GATGTGATGC TGCGCGGCGT GTACCTCACC
TCCTCCCTGC AACGCGGCCA GATAGACGAT ATTTTTATGC AGTCCGCCGC CCGTCAGTTC
CGGCTGGGCA GCAGTCCGCT GACCGCCTGG CCGCTGGTGG ACACGTTACC GTATTTCACC
CGTAATCTGT TTCCGCAGAC CTTACTGGCT GAGCCGAACC TCGCCAGTGA AAGCCGCGTC
TGGCTGATGC AGTCCCGCCG CCGGTTGTCC GTGTTTTCCG CCACTGGCGG CATCGCCGCC
CTGCTGCTGA TTATCGGCTG GCATCACTAT TACAATAACA ACTGGCGTTC CGGCATCACC
GTACTGGAGC AGGCCAAAGC TTTTATGTCG GTTCCGCCAC CGCAGGGTAT GGACGATTAT
GGCAACCTGC AACTACCGTT ACTTAACCCG GTGCGTGACG CCACGCTGGC CTACGGCGAC
TGGGGCGATC GCAGTCGTCT GGCCGATATG GGATTATATC AGGGCAGGCG TGTCGGCCCA
TATGTGGAGC AGACCTACCT GCAACTGCTG GAGCAGCGTT ACCTGCCCGC CCTGTTTAAC
GGCCTGGTCA AAGAGATGAA TGCCGCGCCT GCGGAGAGCG AGGAGAAGCT CGCGGTATTG
CGCGTTATCA GAATGCTGGA AGATAAAAGC GGACGCAGCG ACGAGGTGGT GAAGCAGTAT
ATGGCGAAAC GCTGGAGCGA TAAATTTCAC GGCCAGCGCG ATATTCAGGC ACAGCTAATG
TCTCATCTGG ACTACGCGCT GAAACACACC GACTGGCACG CGGAGCGTCA GGCAGGCGAC
GGCGACGCCA TCAGCCGCTG GACGCCGTAT GACAATCCGG TCGTGGCGGC GCAGAAAGAG
CTCAGCAAAC TGCCCGTCTA CCAGCGCGTT TACCAGAGTC TGAAAACGCG GGCGATGGGC
GTGCTGCCCG CTGATCTGAA CCTGCGTGAC CAGGTGGGCG CCACGTTTGA TCAGGTCTTT
ACCTCCGGGG ATGATAATAA GCTCATTGTT CCGCAGTTCC TCACCCGTTA CGGTCTGCAA
AGTTATTTTG TCAAACAGCG CGACGCGCTG ATCGAACTGA CGGCGATGGA TTCCTGGGTG
CTGAACCTGA CCCGCAGCGT GAAATACAGC GACGCCGACC GGGCGGAAAT CCAGCGCCAG
CTCACTGAAC AGTATCTCAG CGACTACACC GCCACCTGGC GCGCCGGAAT GGACAACCTT
AACGTGCGCA ATTACGAATC CATTGCGCAA CTGACCGGGG CGCTGGAGCA GATCATCAGC
GGCGATCAGC CGCTCCAGCG GGCGCTGACG GCACTGCGCG ACAACACGCA GCCTGCCGTT
CTCTCTGAAA AACTGGATGA CAAGGCGCTT CAGGAGGCGA TGGCGGAGCC GGATTACCAG
TTGCTGACCC GCCTGGGGCA TGAATTTGCC CCGGAAAACA GCACGCTGGC GGTACAGAAA
GACAAAGAAA ACACTCTCCA GGCGGTCTAT CAGCAACTGA CGGAGCTGCA CCGTTACCTG
CTGGCTATTC AGAACGCGCC GGTGCCGGGA AAATCAGCGC TGAAAGCGGT GCAGCTACGG
CTGGATCAGA ACAGCAGCGA TCCTATTTTC GCCACCCGCC AGATGGCGAA AACCCTGCCT
GCCCCGCTCA ACCGCTGGGT GGGCAAGCTG GCGGATCAGG CCTGGCATGT GGTGATGGTG
GAGGCAGTTC ACTATATGGA AGTGGACTGG CGCGACAACG TGGTCAAACC CTTTAATGAA
CAACTCGCCG ACAATTATCC GTTTAACCCA CGCTCACAGT CAGATGCGTC GCTGGATGCG
TTTGAACGCT TCTTTAAACC GAATGGCGTA CTGGATACCT TTTATCAGCA GAACCTGCGT
CTGTTTATGG AAAACGATCT GAGTCTGGAG GACGGGGATA ACAACGTGAT TATTCGTGAG
GATGTCCGGG AGCAACTGGA TACCGCACAG GAAATCCGCG AGGCGTTTTT CAGCAGACAG
AACGGCCTGG GCGCGCAGTT TGCCGTGGAA ACTGTGTCGC TTTCCGGCAA CAAACGGCGC
AGCGTGCTGA ATCTGGACGG GCAGTTAGTG GACTACAGCC AGGGCCGCAA TTACACCGCC
CATCTGGTCT GGCCGAACAA CATGCGTGAA GGCAATGAAA GTAAGCTGAC GCTGATAGGC
GTCAGTGGCG GCGCGCCGCG CAGCATCAGT TTCAGCGGGC CGTGGGCGCA GTTCAGGCTG
TTCGGCGCCG GGCAACTTAC CGGCGTTCAG GAGGGGACAT TCAGCGTGCG CTTTAACGTG
GACGGCGGAG CGATGGTGTA CCGGGTACAT ACCGATACGG AAGATAACCC CTTCACCGGC
GGGCTGTTCA GTCAGTTCCG GCTGCCGGAT ACCCTGTACT GA
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| Protein sequence | MPRFKVSAAW LLALAWILLL VWFWWKGPSW TLYEQRWLAP LANRWLATAA WGLIALTWLT
VRVMKRLQLL EKQQRQQRDE AQDPLSVELN TQQRYLDHWL LRLQRHLDSR RYLWQLPWYM
VTGPAGSGKT TLLREGYPSD IIYAPEALRG VEQRRYVIPH VGKQAVIFDA DGLLFEQQDA
DILHRRLWTH MLDWLAQKRA RQPLNGLILT LDLPDLLTAD KPRREHLLQI LRGRLQDIRQ
HLHCQLPVYV VLTRLDLLHG FAALFQSLDR NDRDAILGVT FTRHAHENDD WRTELNAFWQ
TWGEQLNNVL PERMLAPGSR SSLFSFVRQI QGGREPLIAL LNGLLDGENM DVMLRGVYLT
SSLQRGQIDD IFMQSAARQF RLGSSPLTAW PLVDTLPYFT RNLFPQTLLA EPNLASESRV
WLMQSRRRLS VFSATGGIAA LLLIIGWHHY YNNNWRSGIT VLEQAKAFMS VPPPQGMDDY
GNLQLPLLNP VRDATLAYGD WGDRSRLADM GLYQGRRVGP YVEQTYLQLL EQRYLPALFN
GLVKEMNAAP AESEEKLAVL RVIRMLEDKS GRSDEVVKQY MAKRWSDKFH GQRDIQAQLM
SHLDYALKHT DWHAERQAGD GDAISRWTPY DNPVVAAQKE LSKLPVYQRV YQSLKTRAMG
VLPADLNLRD QVGATFDQVF TSGDDNKLIV PQFLTRYGLQ SYFVKQRDAL IELTAMDSWV
LNLTRSVKYS DADRAEIQRQ LTEQYLSDYT ATWRAGMDNL NVRNYESIAQ LTGALEQIIS
GDQPLQRALT ALRDNTQPAV LSEKLDDKAL QEAMAEPDYQ LLTRLGHEFA PENSTLAVQK
DKENTLQAVY QQLTELHRYL LAIQNAPVPG KSALKAVQLR LDQNSSDPIF ATRQMAKTLP
APLNRWVGKL ADQAWHVVMV EAVHYMEVDW RDNVVKPFNE QLADNYPFNP RSQSDASLDA
FERFFKPNGV LDTFYQQNLR LFMENDLSLE DGDNNVIIRE DVREQLDTAQ EIREAFFSRQ
NGLGAQFAVE TVSLSGNKRR SVLNLDGQLV DYSQGRNYTA HLVWPNNMRE GNESKLTLIG
VSGGAPRSIS FSGPWAQFRL FGAGQLTGVQ EGTFSVRFNV DGGAMVYRVH TDTEDNPFTG
GLFSQFRLPD TLY
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