Gene SeD_A1202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A1202 
Symbol 
ID6873196 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp1193775 
End bp1194656 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content50% 
IMG OID642784383 
ProductRpiR family transcriptional regulator 
Protein accessionYP_002215056 
Protein GI198242183 
COG category[K] Transcription 
COG ID[COG1737] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.658823 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGCCTC AACCCCCACG TCTTAAACCC GGAAAAATCC TTGACACTCT GGGTGCTATG 
CAAAAAAGCC TGACACGTGC CTCCCAGCGT ATTGCGCAAT ATATTTTAGC CTTCCCCAGA 
CAGGTGACAC AGTCATCTAT TGCCGATTTG TCGCGCGACA CACAGGCCGG AGAAGCCACG 
GTTATTCGCT TTTGTCGCAC CCTGGGCTAT AAAGGTTTTC AGGATTTTAA AATGGACCTG 
GCCATTGAAC TTGCCACTAC CGAGTCTGAT GACAGTAGTC CTCTACTGGA TGCCGAAGTT 
AGCGAATCCG ACGATGCCCA CGCCATTGGT TTAAAATTGC AGAACACCAT TAGTAATGTA 
TTGTCTGAAA CGCTAAATCT GCTTGATATG CAACAGGTTC TCGGTGTCGT GGACGCCCTA 
CGTCACTGTC ACTCAGTTTA TATCTTTGGT GTGGGCTCAT CGGGGATCAC GGCGCTGGAT 
ATGAAACACA AGCTAATGCG TATTGGTTTA CGGGGCGATG CGGTAAGCAA TAACCATTTT 
ATGTACATGC AGGCTACGCT ATTAAAAGCA GGCGATGTCG CGATGGGTGT CAGTCACTCG 
GGCACATCGC CAGAAACAGT GCATTCACTC CGATTGGCCC GACAGGCTGG CGCCACCACA 
GTCGCCATTA CCCATAATCT GGGTTCTCCA TTATGTGAAG AGGCCGATTT TTGCCTGATC 
AATGGTAATC GGCAAGGAAT GTTGCAGGGT GACTCGATCG GTACGAAAGC CGCGCAGCTT 
TTCGTCTTTG ACCTGCTCTA TACCCTTCTT GTACAGTCCT CGCCGGAACA GGCCCGAGAA 
AGCAAATTAC GGACAATGAA TGCCCTGGAC ATGACAAAAT AA
 
Protein sequence
MEPQPPRLKP GKILDTLGAM QKSLTRASQR IAQYILAFPR QVTQSSIADL SRDTQAGEAT 
VIRFCRTLGY KGFQDFKMDL AIELATTESD DSSPLLDAEV SESDDAHAIG LKLQNTISNV 
LSETLNLLDM QQVLGVVDAL RHCHSVYIFG VGSSGITALD MKHKLMRIGL RGDAVSNNHF 
MYMQATLLKA GDVAMGVSHS GTSPETVHSL RLARQAGATT VAITHNLGSP LCEEADFCLI 
NGNRQGMLQG DSIGTKAAQL FVFDLLYTLL VQSSPEQARE SKLRTMNALD MTK