| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A1200 |
|---|
| Symbol | putP |
|---|
| ID | 6874229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 1190480 |
|---|
| End bp | 1191988 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642784382 |
|---|
| Product | sodium/proline symporter |
|---|
| Protein accession | YP_002215055 |
|---|
| Protein GI | 198243177 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.133838 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTA GCACACCGAT GTTGGTGACA TTCTGTGTCT ATATTTTTGG CATGATATTG
ATTGGGTTTA TCGCCTGGCG CTCAACCAAA AACTTTGATG ACTATATTCT TGGCGGTCGC
AGCCTGGGGC CGTTTGTTAC GGCTTTATCA GCCGGCGCGT CGGATATGAG CGGCTGGCTG
TTAATGGGGC TGCCTGGCGC TATCTTTCTG TCGGGGATCT CTGAAAGCTG GATCGCCATT
GGCCTGACGT TAGGCGCATG GATTAACTGG AAGCTGGTGG CCGGGCGCCT GCGCGTGCAT
ACCGAATTTA ACAATAACGC GCTCACGCTA CCGGACTATT TTACCGGTCG GTTTGAAGAT
AAGAGCCGAG TCCTGCGTAT TATTTCCGCG CTGGTCATTC TGCTGTTTTT CACTATCTAT
TGCGCATCAG GTATTGTCGC TGGGGCACGA CTGTTCGAAA GCACCTTCGG TATGAGCTAT
GAAACCGCAC TGTGGGCGGG GGCCGCGGCA ACCATTATTT ATACCTTTAT CGGCGGGTTT
CTTGCCGTTA GCTGGACGGA TACCGTTCAG GCCAGCCTGA TGATTTTTGC GTTAATCCTG
ACGCCGGTGA TGGTTATTGT CGGCGTAGGC GGTTTTAGCG AGTCGCTGGA GGTGATCAAG
CAAAAGAGCA TCGAGAATGT CGACATGCTC AAGGGGCTGA ATTTTGTCGC TATTATTTCT
CTGATGGGCT GGGGACTGGG TTACTTCGGT CAGCCGCATA TCCTGGCGCG CTTTATGGCG
GCGGATTCCC ATCACAGTAT TGTTCATGCG CGTCGTATCA GTATGACCTG GATGATTCTG
TGTCTGGCGG GCGCGGTGGC GGTGGGCTTC TTTGGCATTG CGTACTTTAA CAATAACCCC
GCGCTGGCCG GGGCGGTGAA CCAAAACTCA GAACGCGTAT TTATTGAACT GGCGCAGATC
CTGTTTAACC CGTGGATTGC CGGTGTTCTG CTGTCTGCTA TCCTGGCGGC GGTGATGTCG
ACGTTGAGCT GTCAGTTGCT GGTATGCTCC AGCGCGATTA CGGAAGATTT ATATAAGGCT
TTTCTGCGTA AAAGCGCCAG CCAGCAAGAG CTGGTATGGG TAGGGCGAGT GATGGTGCTG
GTGGTAGCGC TGATCGCCAT TGCGCTGGCG GCGAACCCCG ATAACCGTGT GCTGGGGCTG
GTGAGCTACG CCTGGGCTGG ATTCGGCGCG GCATTTGGGC CTGTTGTCCT GTTTTCTGTG
ATGTGGTCGC GTATGACACG TAACGGCGCG CTGGCGGGAA TGATTATTGG CGCGGTGACG
GTTATCGTCT GGAAACAATA TGGCTGGCTG GATCTGTATG AGATTATCCC TGGCTTCATT
TTCGGCAGCC TGGGGATCGT AATCTTTAGC CTGCTTGGCA AAGCGCCGAC AGCAGCGATG
CAGGAACGCT TTGCAAAAGC GGACGCGCAT TATCATTCCG CGCCGCCGTC GAAGCTACAG
GCGGAATAA
|
|---|
| Protein sequence | MAISTPMLVT FCVYIFGMIL IGFIAWRSTK NFDDYILGGR SLGPFVTALS AGASDMSGWL
LMGLPGAIFL SGISESWIAI GLTLGAWINW KLVAGRLRVH TEFNNNALTL PDYFTGRFED
KSRVLRIISA LVILLFFTIY CASGIVAGAR LFESTFGMSY ETALWAGAAA TIIYTFIGGF
LAVSWTDTVQ ASLMIFALIL TPVMVIVGVG GFSESLEVIK QKSIENVDML KGLNFVAIIS
LMGWGLGYFG QPHILARFMA ADSHHSIVHA RRISMTWMIL CLAGAVAVGF FGIAYFNNNP
ALAGAVNQNS ERVFIELAQI LFNPWIAGVL LSAILAAVMS TLSCQLLVCS SAITEDLYKA
FLRKSASQQE LVWVGRVMVL VVALIAIALA ANPDNRVLGL VSYAWAGFGA AFGPVVLFSV
MWSRMTRNGA LAGMIIGAVT VIVWKQYGWL DLYEIIPGFI FGSLGIVIFS LLGKAPTAAM
QERFAKADAH YHSAPPSKLQ AE
|
|---|
| |