Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1145 |
Symbol | ompA |
ID | 6874754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 1139444 |
End bp | 1140553 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642784329 |
Product | outer membrane protein A |
Protein accession | YP_002215003 |
Protein GI | 198244081 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00470585 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTATCTC GTTGGAGATA TTCATGGCGT ATTTTGGATG ATAACGAGGC GCAAAAAATG AAAAAGACAG CTATCGCGAT TGCAGTGGCA CTGGCTGGTT TCGCTACCGT AGCGCAGGCC GCTCCGAAAG ATAACACCTG GTACGCTGGT GCTAAACTGG GCTGGTCTCA GTACCATGAC ACCGGCTTCA TTCACAATGA TGGCCCGACT CATGAAAACC AACTGGGCGC AGGTGCTTTT GGTGGTTACC AGGTTAACCC GTATGTTGGC TTTGAAATGG GCTACGACTG GTTAGGCCGT ATGCCGTACA AAGGCGACAA CATCAATGGC GCTTATAAAG CTCAGGGCGT TCAGTTGACC GCTAAACTGG GTTATCCAAT CACTGACGAT CTGGACGTTT ATACCCGTCT GGGTGGTATG GTATGGCGTG CAGACACCAA GTCTAACGTC CCTGGCGGCC CGTCTACTAA AGACCACGAC ACCGGCGTTT CCCCGGTATT CGCGGGCGGT ATCGAGTATG CCATCACCCC TGAAATCGCA ACCCGTCTGG AATACCAGTG GACTAACAAC ATCGGTGATG CCAACACCAT CGGCACCCGT CCGGACAACG GCCTGCTGAG CGTAGGTGTT TCCTACCGTT TCGGCCAGCA AGAAGCTGCT CCGGTAGTAG CTCCGGCACC GGCTCCGGCT CCGGAAGTAC AGACCAAGCA CTTCACTCTG AAGTCTGACG TACTGTTCAA CTTCAACAAA TCTACCCTGA AGCCGGAAGG CCAGCAGGCT CTGGATCAGC TGTACAGCCA GCTGAGCAAC CTGGATCCGA AAGACGGTTC CGTTGTCGTT CTGGGCTTCA CTGACCGTAT CGGTTCTGAC GCTTACAACC AGGGTCTGTC CGAGAAACGT GCTCAGTCTG TTGTTGATTA CCTGATCTCC AAAGGTATTC CGTCTGACAA AATCTCCGCA CGTGGTATGG GCGAATCTAA CCCGGTTACC GGCAACACCT GTGACAACGT GAAACCTCGC GCTGCCCTGA TCGATTGCCT GGCTCCGGAT CGTCGCGTAG AGATCGAAGT TAAAGGCGTT AAAGACGTGG TAACTCAGCC GCAGGCTTAA
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Protein sequence | MLSRWRYSWR ILDDNEAQKM KKTAIAIAVA LAGFATVAQA APKDNTWYAG AKLGWSQYHD TGFIHNDGPT HENQLGAGAF GGYQVNPYVG FEMGYDWLGR MPYKGDNING AYKAQGVQLT AKLGYPITDD LDVYTRLGGM VWRADTKSNV PGGPSTKDHD TGVSPVFAGG IEYAITPEIA TRLEYQWTNN IGDANTIGTR PDNGLLSVGV SYRFGQQEAA PVVAPAPAPA PEVQTKHFTL KSDVLFNFNK STLKPEGQQA LDQLYSQLSN LDPKDGSVVV LGFTDRIGSD AYNQGLSEKR AQSVVDYLIS KGIPSDKISA RGMGESNPVT GNTCDNVKPR AALIDCLAPD RRVEIEVKGV KDVVTQPQA
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