Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A1009 |
Symbol | |
ID | 6872465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 1001137 |
End bp | 1003083 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642784194 |
Product | macrolide transporter ATP-binding /permease protein |
Protein accession | YP_002214869 |
Protein GI | 198244525 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.351129 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGCAT TGCTTGAACT GCGCAATGTG AGTCGCAGCT ACCCCTCCGG AGAAGAGCAG GTGGCGGTGT TGAAAGATAT CTCCCTGCAA ATCCACGCCG GGGAGATGGT GGCGATCGTC GGCGTTTCCG GTTCTGGAAA ATCAACGCTG ATGAATATCC TCGGGTGCCT GGATAAACCG ACCAGCGGCA CTTATCGGGT GGCGGGGCGG GACGTCTCGA CGCTGGACCC GGACGCGCTG GCGCAGCTGC GGTGTGAGCA TTTTGGCTTT ATCTTTCAGC GCTACCATCT GTTGTCGCAT TTAACGGCAG CGCAAAATGT TGAAATCCCC GCCGTCTACG CCGGCATTGA ACGCAAAAAA CGCCAGGCGC GCGCCAGAGA GTTACTTCTG CGGCTGGGAT TAAGCGATCG CGTCGATTAC CCGCCTTCAC AGCTTTCTGG CGGACAGCAG CAGCGTGTCA GTATTGCCCG CGCGCTGATG AACGGCGGAC AGGTGATTCT GGCGGATGAG CCGACCGGCG CGCTGGATAG CCATTCCGGC GAAGAGGTGA TGGCGATTTT GCGCCAACTG CGCGATCGCG GACATACGGT GATCATTGTG ACGCACGATC CGCTGATTGC CGCCCAGGCG GAGCGGATTA TTGAAATTCA CGATGGCAAG ATTGTCCATA ATCCGCCCGC GGAGGAAAAG AAACGCGAAC AGGGCGTTGA CGCTGCCGTA GTTAATACGG CTCCCGGCTG GCGGCAATTT GCCAGCAGCT TTCGCGAAGC GCTGTCAATG GCGTGGTTAG CGATGGCCGC TAACAAAATG CGTACTTTAC TGACCATGCT GGGAATTATT ATCGGTATTG CGTCGGTGGT GTCGATTGTG GTGGTCGGCG ACGCCGCAAA ACAGATGGTA CTGGCGGATA TCCGCGCTAT GGGCACTAAC ACGATTGATA TTCATCCAGG CAAAGATTTT GGCGACGACA ATCCGCAGTA TCGACAGGCG CTGAAATATG ACGATCTGGT CGCTATTCAG AAACAGCCGT GGGTTAACTC TGCGACGCCC AGCGTTTCAA AGAGCTTACG TCTTCGCTAT GGCAATATTG ATATTGCCGT AAATGCTAAT GGCGTCAGTG GCGATTATTT TAACGTTTAC GGCATGTCCT TTAGGGAGGG GAACACCTTC AATGCTGTAC AGCAACAGGA TCGCGCGCAG GTGGTGGTGC TGGATGCCAA CACGCGACGC CAGCTATTTC CAAATAAAGC GAATGTCGTA GGGGAAGTGG TGCTGGTGGG TAATATGCCG GTTATTGTTA TTGGCGTGGC GGAAGAGAAA CCGTCCATGT ACGGCAATAG CAATCTGTTG CAAGTTTGGT TGCCCTATAG CACGATGTCA GATCGCATAA TGGGTCAGTC ATGGCTTAAC TCGATCACCG TTCGTGTGAA AGATGGCGTT GATAGCGATC AGGCTGAACA GCAGCTTACC CGCCTGCTCA CCTTACGCCA CGGTAAAAAA GACTTCTTCA CCTGGAATAT GGACAGCGTT CTGAAAACGG CTGAAAAAAC CACCTATACT CTTCAGTTAT TTCTGACGCT GGTGGCCGTC ATTTCGCTGG TTGTCGGCGG CATTGGCGTT ATGAATATTA TGCTGGTTTC CGTCACCGAG CGAACGCGTG AAATCGGCAT CCGTATGGCG GTAGGCGCGC GCGCCAGCGA TGTGCTACAG CAGTTTCTTA TTGAAGCGGT GCTGGTTTGC CTGGTTGGGG GAGCGCTGGG GATTAGCTTG TCGATGTTCA TCGCATTTAT GCTACAGCTT TTCCTGCCCG GCTGGGAGAT CGGTTTTTCA CTGACTGCGC TGGCGAGCGC GTTTTTATGT TCGACGTTTA CCGGGATACT GTTTGGCTGG CTACCGGCGA GAAACGCGGC GCGACTGGAC CCGGTGGATG CGCTGGTAAG GGAGTAA
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Protein sequence | MTALLELRNV SRSYPSGEEQ VAVLKDISLQ IHAGEMVAIV GVSGSGKSTL MNILGCLDKP TSGTYRVAGR DVSTLDPDAL AQLRCEHFGF IFQRYHLLSH LTAAQNVEIP AVYAGIERKK RQARARELLL RLGLSDRVDY PPSQLSGGQQ QRVSIARALM NGGQVILADE PTGALDSHSG EEVMAILRQL RDRGHTVIIV THDPLIAAQA ERIIEIHDGK IVHNPPAEEK KREQGVDAAV VNTAPGWRQF ASSFREALSM AWLAMAANKM RTLLTMLGII IGIASVVSIV VVGDAAKQMV LADIRAMGTN TIDIHPGKDF GDDNPQYRQA LKYDDLVAIQ KQPWVNSATP SVSKSLRLRY GNIDIAVNAN GVSGDYFNVY GMSFREGNTF NAVQQQDRAQ VVVLDANTRR QLFPNKANVV GEVVLVGNMP VIVIGVAEEK PSMYGNSNLL QVWLPYSTMS DRIMGQSWLN SITVRVKDGV DSDQAEQQLT RLLTLRHGKK DFFTWNMDSV LKTAEKTTYT LQLFLTLVAV ISLVVGGIGV MNIMLVSVTE RTREIGIRMA VGARASDVLQ QFLIEAVLVC LVGGALGISL SMFIAFMLQL FLPGWEIGFS LTALASAFLC STFTGILFGW LPARNAARLD PVDALVRE
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