| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0987 |
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| Symbol | rumB |
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| ID | 6871337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 977248 |
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| End bp | 978375 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642784172 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_002214847 |
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| Protein GI | 198242601 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.197479 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 90 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTGCG CACTCTATGA CGCGGGTCGC TGCCGTTCCT GTCAATGGAT TACGCAGTCG
GTTAACGAAC AACTTTCCGC AAAAACAGCC GATTTACATC GTTTGCTCGC CGGGCTGCCT
GTTGAACAGT GGTGCTCGCC GATTGGCGGC CCGGAACAGC ATTTCCGCAA CAAAGCGAAA
ATGGTCGTGA GCGGTAGTGT AGAAAAACCG CTCTTCGGGA TGCTGCATCG CGACGGTACG
CCGGTCGATC TTTGCGGCTG CCCGCTGTAT CCCGCCTCCT TTGCCCCCGT ATTCAGCGCG
CTAAAACCTT TTATTGCCCG TGCCGGACTC ACGCCTTATA ACGTGGCGCG AAAACGCGGC
GAACTGAAAT ACCTGTTGCT GACGGAAAGC CAGTTCGATG GCGGTATGAT GCTACGCTTC
GTGTTGCGTT CAGAAACCAA ACTTACGCAA CTGCGCGCGG CGTTACCGTG GCTGCGCGCG
CAACTGCCGC AGCTCAGAGT GATCACCGCA AATATTCAGC CGGTACATAT GGCGATTATG
GAAGGGGAGA CGGAAATCTA CCTGACGGAT CAGCAGGCGC TGGCGGAACG TTTTAACGAT
GTGCCGCTGT GGATTCGCCC GCAAAGTTTC TTTCAGACCA ACCCTACGGT CGCCAGCCGA
TTATATGCAA CGGCGCGCGA TTGGGTAGGG CAACTGCCGG TACGCCATAT GTGGGATCTT
TTTTGCGGAG TGGGCGGATT CGGCCTGCAC TGCGCGACGC CGCAGATGCA ATTAACCGGT
ATTGAGATCG CGCCGGAGGC GATTGCCTGC GCGAAGCAAT CCGCTGCCGA GCTGGGATTG
ACCCGCCTTC ATTTCCAGGC GCTGGATTCC ACTCAATTCG CCACCGCACA AGGCGAAACG
CCCGACCTGG TGTTGGTGAA TCCTCCCCGC CGCGGCATTG GCAAGCCGTT GTGCGATTAC
CTTGCACAAA TGGCGCCGCG TTTTATTATT TATTCGAGCT GTAACGCGCA GACGATGGCG
CAGGATATTC GCCATCTTCC GAACTACCGT ATTCAACGTG TTCAGCTTTT CGATATGTTC
CCGCATACCG CGCATTATGA AGTGTTAACA CTGCTTTGCA GGCTGTAG
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| Protein sequence | MQCALYDAGR CRSCQWITQS VNEQLSAKTA DLHRLLAGLP VEQWCSPIGG PEQHFRNKAK
MVVSGSVEKP LFGMLHRDGT PVDLCGCPLY PASFAPVFSA LKPFIARAGL TPYNVARKRG
ELKYLLLTES QFDGGMMLRF VLRSETKLTQ LRAALPWLRA QLPQLRVITA NIQPVHMAIM
EGETEIYLTD QQALAERFND VPLWIRPQSF FQTNPTVASR LYATARDWVG QLPVRHMWDL
FCGVGGFGLH CATPQMQLTG IEIAPEAIAC AKQSAAELGL TRLHFQALDS TQFATAQGET
PDLVLVNPPR RGIGKPLCDY LAQMAPRFII YSSCNAQTMA QDIRHLPNYR IQRVQLFDMF
PHTAHYEVLT LLCRL
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