Gene SeD_A0913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0913 
Symbol 
ID6871945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp907835 
End bp908830 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content58% 
IMG OID642784106 
Producthypothetical protein 
Protein accessionYP_002214781 
Protein GI198244763 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.16155 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC CTGTCGTTAT CGGACTGGCA ATCGCAGCGA TCGTCGCTGT GATTGCCGGT 
GGAACCTGGT GGTATCAAAG TCGGCAGGAC GATGGGCTGA CGCTATACGG TAATGTCGAT 
ATCCGTACCG TCAATATCAG CTTTCGCGTC GGCGGCAGGC TGGCGTCGCT GAATGTTGAT 
GAAGGCGATA CTATCAAAGC CGGACAGGTG CTCGGCGAAC TGGATCACGC GCCATACGAA 
AACGCGCTAA TGCAGGCGAA AGCTGGCGTG TCGGTCGCGC AGGCGCAATA TGATTTGATG 
CTGGCAGGCT ATCGCGATGA AGAGATAGCC CAGGCCGCCG CCGCCGTCAG ACAGGCGCAA 
GCCGCCTATG ACTACGCGCA AAACTTTTAT AACCGTCAGC AAGGTTTGTG GAAAAGCCGC 
ACCATTTCCG CTAACGATCT GGAAAACGCC CGCTCATCGC GCGATCAGGC GCAGGCGACG 
CTGAAGTCCG CGCAGGATAA ACTGAGCCAG TACCGTACCG GTAATCGTGA ACAGGATATC 
GCCCAGGCGA AAGCCAGCCT GGAACAGGCA AAGGCCCAAC TGGCGCAGGC GCAGCTTGAT 
TTGCAGGACA CCACGCTTAT CGCGCCTGCC AACGGAACCT TGCTCACCCG CGCGGTCGAG 
CCTGGCAGTA TGCTGAACGC CGGCAGCACG GTATTAACGC TCTCGCTGAC CCGCCCCGTC 
TGGGTGCGCG CCTATGTCGA TGAACGCAAC CTCAGTCAGA CGCAACCGGG GCGCGACATT 
CTGTTGTATA CCGACGGTCG TCCTGACAAA CCTTACCACG GCAAGATTGG TTTCGTTTCG 
CCCACCGCGG AATTTACGCC GAAAACCGTC GAAACGCCGG ATCTGCGTAC CGATCTCGTC 
TATCGCCTGC GCATTATCGT CACCGATGCG GACGATGCGT TACGCCAGGG GATGCCAGTC 
ACGGTGAAAT TTAATGACGA GGCACGGCAT GAGTGA
 
Protein sequence
MKKPVVIGLA IAAIVAVIAG GTWWYQSRQD DGLTLYGNVD IRTVNISFRV GGRLASLNVD 
EGDTIKAGQV LGELDHAPYE NALMQAKAGV SVAQAQYDLM LAGYRDEEIA QAAAAVRQAQ 
AAYDYAQNFY NRQQGLWKSR TISANDLENA RSSRDQAQAT LKSAQDKLSQ YRTGNREQDI 
AQAKASLEQA KAQLAQAQLD LQDTTLIAPA NGTLLTRAVE PGSMLNAGST VLTLSLTRPV 
WVRAYVDERN LSQTQPGRDI LLYTDGRPDK PYHGKIGFVS PTAEFTPKTV ETPDLRTDLV 
YRLRIIVTDA DDALRQGMPV TVKFNDEARH E