Gene SeD_A0624 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0624 
Symbol 
ID6875242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp629058 
End bp629891 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content47% 
IMG OID642783841 
ProductDNA replication protein gp18 
Protein accessionYP_002214527 
Protein GI198246070 
COG category 
COG ID 
TIGRFAM ID[TIGR01610] phage replication protein O, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value0.00127495 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGTAATC TTGCAACAGT TACACCGATA AAACCTCATC TGGAGGTTGT GGAGCATCGC 
GTGGCAGAAC TCGACGATGG CTACACCCGG ACTGCAAATA CACTGCTGGA AGCTGTCATG 
CTTTCTGGGC TTACTCAACA TCAGCTACTG ATTGTTATGG CTGTGTGGCG CAAGACATAC 
GGTTATAACA AAAAAATAGA TTGGATCGGA AATGAACAGT TCGCTGAACT CACTGGCATG 
GCGCCAACCA AATGTTCTAC CGCCAAAAAC GAGCTTATCA GAATGGGGGT TCTCACTCAG 
GTGGGGCGTC AGGTTGGTAT GAATAAAAAT ATTTCCGAGT GGAAGACGAA GGTTAACGGA 
TTCGGTAAAA CATTTACCAG ATCGGTAAAA CTAACCTTCA CCAAATCGGT AAAAACCAAT 
TTACCGAATC AGTCAAACAC AAAAGACAAT ATACAAAAGA CAATAAATAC AAATCCCCCC 
TTACCCCCTA ACGGGGGCGG CAATGGGCAG GTTAAACCTG AACGTCGCAA GGCAGAACGA 
ATCGACTATG AATCCTTCCT GAACGCCTAC AACACCGAAG TTGGTGACAG ACTTCCACAT 
GCTGTTTCGG TCAACGAGAA ACGGAAACGC CGCCTGAAGA AAATCATCCC GCAACTGAAA 
ACGCCAAACG TGGACGGTTT CAGGGCGTAT ATCAGGGCGT TTGTGCATCA GGCCAAGCCG 
TTTTACTTCG GAGACAACGA CACAGGCTGG ACGGCTGATT TTGATTACCT GCTGAGGGAA 
GATTCGTTAA CGGGAGTTCG GGAAGGGAAG TTTGCAGACA GGGGGATTGC ATGA
 
Protein sequence
MSNLATVTPI KPHLEVVEHR VAELDDGYTR TANTLLEAVM LSGLTQHQLL IVMAVWRKTY 
GYNKKIDWIG NEQFAELTGM APTKCSTAKN ELIRMGVLTQ VGRQVGMNKN ISEWKTKVNG 
FGKTFTRSVK LTFTKSVKTN LPNQSNTKDN IQKTINTNPP LPPNGGGNGQ VKPERRKAER 
IDYESFLNAY NTEVGDRLPH AVSVNEKRKR RLKKIIPQLK TPNVDGFRAY IRAFVHQAKP 
FYFGDNDTGW TADFDYLLRE DSLTGVREGK FADRGIA