Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0330 |
Symbol | |
ID | 6874032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 347186 |
End bp | 349696 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642783568 |
Product | outer-membrane fimbrial usher protein |
Protein accession | YP_002214256 |
Protein GI | 198245015 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.428849 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 0.361792 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTCA AACAACCTGC CTTGCTACTG TTCATCGCGG GAGTGGTTCA TTGCGCAAAT GCGCACGCTT ACACATTCGA TGCATCAATG TTGGGCGATG CAGCGAAAGG GGTTGATATG TCGCTCTTTA ACCAGGGGGT ACAACAGCCA GGGACTTATC GAGTGGACGT GATGGTGAAT GGTAAACGTG TCGACACCCG TGATGTGGTG TTCAAATTGG AAAAGGATGG GCAAGGAACG CCTTTTCTGG CTCCTTGTTT GACGGTCAGT CAGCTTTCAC GCTACGGCGT AAAAACGGAA GATTACCCTC AGTTGTGGAA AGCAGCAAAG ACCCCAGATG AGTGTGCGGA TCTGACCGCC ATTCCACAGG CTAAAGCGGT ACTGGATATC AATAATCAGC AACTGCAACT GAGTATTCCT CAGGTGGCGT TGCGTCCGGA ATTTAAGGGG ATCGCTCCTG AAGATCTCTG GGATGATGGT ATTCCGGCGT TTCTGATGAA CTACAGTGCG AGGACAACGC AGACGGATTA CAAAATGGAT ATGGAGAGGC GTGACAACTC TTCCTGGGTA CAACTGCAAC CGGGAATCAA TATAGGTGCG TGGCGTGTCC GCAATGCGAC CAGCTGGCAG CGGAGTGGTC AACTGTCGGG GAAGTGGCAG GCAGCATATA CCTATGCTGA GCGTGGACTG TACTCACTAA AAAGTCGTCT GACTCTGGGG CAAAAGACTT CGCAGGGGGA GATATTTGAT AGTGTGCCAT TTACCGGTGT GATGTTGGCA TCGGATGACA ACATGGTGCC CTACAGTGAG CGGCAGTTTG CTCCGGTAGT GCGTGGGATT GCCCGCACGC AGGCTCGGGT GGAGGTCAAA CAGAATGGTT ACACCATTTA CAACACCACC GTGGCGCCCG GACCGTTTGC ACTGCGGGAT CTGTCGGTAA CAGACAGTAG TGGTGATCTG CATGTCACCG TGTGGGAGGC CGATGGCAGT ACACAAATGT TTGTGGTGCC GTATCAGACC CCGGCGATAG CACTGCACCA GGGATATTTG AAGTACAGCC TGTTGGCGGG CCGATACCGA TCGTCAGACT CTGCAACGGA TAAGGCGCAG ATCGCGCAGG CTACGTTGAT GTATGGTCTG CCGTGGAATC TCACTGCATA CGGCGGTATA CAGAGTGCAA CGCACTATCA AGCTGCATTG CTTGGTTTGG GGGGATCTCT CGGGCGGTGG GGGAGTTTAT CTGTCGATGG AAGCGACACA CACAGTCAGC GTCAGGGGGA GGCGGTACAG CAAGGAGCCT CCTGGCGACT GCGTTACAGC AACCAGCTGA CTGCGACGGG GACAAATTTT TTTCTGACGA GATGGCAGTA TGCCTCGCAG GGCTATAACA CCCTATCCGA TGTGCTCGAC AGTTATCGAC ATGATGGCAA CCGTCTATGG TCGTGGCGGG AAAATTTGCA GCCGAGCTCG CGTACTACCC TGATGTTGAG CCAGTCATGG GGGAGGCATT TGGGCAATCT GAGTTTAACC GGTTCCCGTA CCGACTGGCG TAATCGCCCC GGTCATGATG ACAGCTACGG ACTGAGTTGG GGAACCTCTA TCGGAGGGGG CTCGCTGTCA TTGAACTGGA ATCAAAACAG AACGCTGTGG CGCAATGGCG CGCACCGTAA AGAGAACATA ACCAGCCTGT GGTTCAGTAT GCCATTAAGC CGCTGGACGG GGAATAATGT AAGTGCTAGT TGGCAGATGA CTTCACCATC ACACGGTGGT CAGACGCAAC AAGTGGGGGT CAACGGAGAG GCATTCAGTC AGCAACTGGA TTGGGAGGTG CGTCAGAGTT ACCGTGCCGA TGCCCCGCCA GGTGGTGGTA ATAACAGCGC ATTGCACTTG GCATGGAATG GGGATTACGG CCTGTTAGGT GGTGACTATA GCTACAGCCG GGCGATGCGC CAGATGGGAG TCAATATCGC GGGAGGTATA GTTATCCACC ATCATGGTGT GACGCTGGGG CAACCTTTGC AAGGCTCAGT GGCGCTGGTT GAAGCGCCAG GGGCCTCGGG GGTGCCAGTT GGCGGCTGGC CTGGCGTTAA GACGGATTTT CGTGGCGACA CCACAGTGGG CAACCTGAAC GTCTATCAGG AGAATACAGT CAGCCTCGAT CCGTCGCGAC TACCGGATGA CGCAGAGGTC ACACAAACCG ATGTGCGCGT GGTGCCAACC GAAGGGGCGG TGGTGGAAGC GAAGTTTCAC ACTCGCATCG GGGCCAGGGC ACTGATGACG CTGAAACGGG AAGATGGTAG CGCCATTCCT TTCGGGGCGC AGGTTACAGT CAATGGGCAG GATGGCAGTG CTGCTCTGGT GGATACTGAT AGCCAGGTTT ATCTCACTGG TTTGGCGGAT AAGGGCGAAC TGACGGTGAA ATGGGGAGCA CAGCAATGTC GGGTTAACTA CCACCTACCT GCCCACAAGG GAATCGCGGG CTTGTATCAA ATGAGCGGTC TCTGCAGATA A
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Protein sequence | MKFKQPALLL FIAGVVHCAN AHAYTFDASM LGDAAKGVDM SLFNQGVQQP GTYRVDVMVN GKRVDTRDVV FKLEKDGQGT PFLAPCLTVS QLSRYGVKTE DYPQLWKAAK TPDECADLTA IPQAKAVLDI NNQQLQLSIP QVALRPEFKG IAPEDLWDDG IPAFLMNYSA RTTQTDYKMD MERRDNSSWV QLQPGINIGA WRVRNATSWQ RSGQLSGKWQ AAYTYAERGL YSLKSRLTLG QKTSQGEIFD SVPFTGVMLA SDDNMVPYSE RQFAPVVRGI ARTQARVEVK QNGYTIYNTT VAPGPFALRD LSVTDSSGDL HVTVWEADGS TQMFVVPYQT PAIALHQGYL KYSLLAGRYR SSDSATDKAQ IAQATLMYGL PWNLTAYGGI QSATHYQAAL LGLGGSLGRW GSLSVDGSDT HSQRQGEAVQ QGASWRLRYS NQLTATGTNF FLTRWQYASQ GYNTLSDVLD SYRHDGNRLW SWRENLQPSS RTTLMLSQSW GRHLGNLSLT GSRTDWRNRP GHDDSYGLSW GTSIGGGSLS LNWNQNRTLW RNGAHRKENI TSLWFSMPLS RWTGNNVSAS WQMTSPSHGG QTQQVGVNGE AFSQQLDWEV RQSYRADAPP GGGNNSALHL AWNGDYGLLG GDYSYSRAMR QMGVNIAGGI VIHHHGVTLG QPLQGSVALV EAPGASGVPV GGWPGVKTDF RGDTTVGNLN VYQENTVSLD PSRLPDDAEV TQTDVRVVPT EGAVVEAKFH TRIGARALMT LKREDGSAIP FGAQVTVNGQ DGSAALVDTD SQVYLTGLAD KGELTVKWGA QQCRVNYHLP AHKGIAGLYQ MSGLCR
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