Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0310 |
Symbol | |
ID | 6873579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 329155 |
End bp | 331344 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642783553 |
Product | Rhs family protein |
Protein accession | YP_002214241 |
Protein GI | 198243551 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.261642 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.473286 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTTG TATCCACAAA TAATAAATCC GGTATGGGAG GGCTGACGAC AACCACGCCG CCGATAACCG GAGAAAGTGG CGGTGTCACC GCAGATTCAG TCGCCGGAAG CGTGGCAGAT GCGGCGGAAT CCGCCGTGGA ACAGGCTGCG GGATCGCTGT TTGGCGCATT GCCGGAGCCA TCAGGACTGG TGAAAGCCGC GGTAGCAGCG GCGCAGGCTG CCGCCGCCGC AGGTATGGCG CAGGATGCGG TATCGGCCAT CGTCTCTGCT GTTGCAGACG GGCCGGGGGC GCATAATGTG ACGGTCAGCG GCAGCGCCGT ACCGCCGGGC GCATTACTGT TCGCCAGCCT GGACGGCGGC GAAACATTAA GTGAACTGTT CAGCTATGTG GTACAGCTAA AAACGCCCGA CACCCTGAAT CTGGGCTATG TCTCCCCGGC GGCCAACCTG CCGCTCAAAC CGATGGTGGG CAAAGATCTG TGCGTCAACA TCGAACTGGA TGGTGGCGGT AAACGACATA TCAGCGGGCT GGTCACGGCG GCGCGGGTGG TGGGCCATGA AGGGCGTTCG GTTACCTATG AGCTGCGTAT GGAGCCGTGG CTGAAACTGC TGACCCATAC CAGCGACTAC AAAGCATTCC AGAATAAAAC CGTGGTGGAT ATTCTGGATG AGGTTCTGGC GGAATACCCC TACCCGGTGG AAAAGCGGCT GGTGGAAAGC TACCCGGTAC GCACCTGGCA GGTGCAGTAC GGTGAAACTG ATTTTGATTT TCTTCAGCGA CTGATGCAGG AGTGGGGCAT CTACTGGTGG TTTGAGCACA GCGAGGACAG CCACACGCTG GTGCTGGCGG ATGCCATCAG CGCCCACAAA GCATGTCCGG ACTCGCCGCT GGTCGAGTGG CACCAGGAAG GGCTGAAGCT GGACAAGGAG TTTATCCACA CTATCACGGC AAACGAGAGT CTGCGGACTG GCCAGTGGGT GCTGGATGAT TTCGATTTTA CGAAGCCACG TTCATTGCTG GCAAACACGG TGGCAAACCC GCGTGAAACC GGTCATGCCA CCTACGAGCA TTATGAGTGG CCGGGAGACT ACTTCGACAA GAGTGAAGGC GAGATGCTGA CGCGCATTCG TATGGAAGCG CAGCGCAGCC CCGGCAGCCG GGTGCTGGGT GCCGGGAATA TTCGTACGCT GATGACAGGC TATACCTTCA CGCTGGAAAA CTATCCCACC GCCGAAGTCA ATCAGGAATA TCTGCTGATG CAGACCTTGC TGTTTGTGCA GGACAACGCG CAGCACAGCG GGCAGGACCA GCACTTTACC TTTTCCACCC GTTTTGAACT GCACCCCACC CGCGAGGTGT TCCGCCCGCA GCGGACGGTG AGCAAACCCC ACACCAAAGG GCCGCAGAGC GCCATTGTCA CCGGCCCGTC GGGCCAGGAA ATCTGGACGG ATCAGTACGG GCGGGTAAAG GTACAGTTTG GCTGGGATCG CTACGGCAAA ATGGATGAAA ACAGCTCCTG CTGGATACGC GTCAGCTACC CATGGGCGGG CAAAGGCTTC GGGATGATCC AGATCCCGCG TATCGGCCAG GAAGTGCTGG TGGATTTCAA AAACGGCGAT CCGGATCTGC CGATCATCGT GGGGCGTACC TACAACCAGG ACACCATGCC GCCGTGGGGA CTGCCGGGAA TGGCGTCGCA GAGCGGGATC TTCAGCCACT CGCTGTATGG CGGGCCAACG AACGGCAACA TGCTGCGTTT TGACGACAAA ACGGGCGCGG AGGAAGTGAA GTTCCACGCG GAAAAAGATC TCAACACCAC GGTGAAGAAT AATGAAACGC ATACGGTTAT GGTGGATCGC ACTAAAACCA TTATTAAAAA TGAAACCAAC AGTATTGGTG AGGACAGAAA CACCACGGTA ACGAAGAATG ACGGCCTTTC CGTAAAACTG GCGCAGACGA TCAATATCGG CACCACTTAT CGTTTAGATG TTGGCGATCA ATTCACACTT CGCTGCGGCA ATGCGGCGCT TGTTTTACAT AAGGACGGCT CCATTGAGTT TTGTGGCAAG CAACTGATGT TACATACCAG CGATGTCATG CAACTGATTG GTAAAGGTAT TGATATGAAC CCGGATGGCG GCACAGCCGT AACCGCCGAT GATATTGCCC CCCTTCCCAC CTCTGAGTGA
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Protein sequence | MSFVSTNNKS GMGGLTTTTP PITGESGGVT ADSVAGSVAD AAESAVEQAA GSLFGALPEP SGLVKAAVAA AQAAAAAGMA QDAVSAIVSA VADGPGAHNV TVSGSAVPPG ALLFASLDGG ETLSELFSYV VQLKTPDTLN LGYVSPAANL PLKPMVGKDL CVNIELDGGG KRHISGLVTA ARVVGHEGRS VTYELRMEPW LKLLTHTSDY KAFQNKTVVD ILDEVLAEYP YPVEKRLVES YPVRTWQVQY GETDFDFLQR LMQEWGIYWW FEHSEDSHTL VLADAISAHK ACPDSPLVEW HQEGLKLDKE FIHTITANES LRTGQWVLDD FDFTKPRSLL ANTVANPRET GHATYEHYEW PGDYFDKSEG EMLTRIRMEA QRSPGSRVLG AGNIRTLMTG YTFTLENYPT AEVNQEYLLM QTLLFVQDNA QHSGQDQHFT FSTRFELHPT REVFRPQRTV SKPHTKGPQS AIVTGPSGQE IWTDQYGRVK VQFGWDRYGK MDENSSCWIR VSYPWAGKGF GMIQIPRIGQ EVLVDFKNGD PDLPIIVGRT YNQDTMPPWG LPGMASQSGI FSHSLYGGPT NGNMLRFDDK TGAEEVKFHA EKDLNTTVKN NETHTVMVDR TKTIIKNETN SIGEDRNTTV TKNDGLSVKL AQTINIGTTY RLDVGDQFTL RCGNAALVLH KDGSIEFCGK QLMLHTSDVM QLIGKGIDMN PDGGTAVTAD DIAPLPTSE
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