Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0306 |
Symbol | |
ID | 6872045 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 323143 |
End bp | 327012 |
Gene Length | 3870 bp |
Protein Length | 1289 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642783549 |
Product | SciS protein |
Protein accession | YP_002214237 |
Protein GI | 198242462 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 0.422511 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAAT TTCTTAGTCT GCTTTTTTCC CGGCGCGCGC TGGCAGTTGT GGGCGTTCTG GTTCTGGCGC TGCTGGTCTG GTTTGTCGGG CCGCTGGTGT CATTTGATAC CCTGCGCCCG CTGGCCTCCG TGGGTAGCCG GGTAGTGACC ATTGCCCTGT TGCTGATGCT GCTGGTACTG TGGCTGGTCA ACTGGTCGAT GAGTATCATC GGCATCAGTG TCCTGTGCCT GGCGATTGGC TTCGTCACAC CGCTGCTGGC CCTGGGCGAT GTCCATCCGT TTGCGCCGCT GTGGGTCCGC CTGACATTAA TTGGTTTCAT CCTGCTGATG TACGCGCTGT ACGGCCTGTA CCGGCTGTGG CGTGCGCTGC GTATGGATGA ACAACTGCTG CGTCGCTTCC TGCATCCGCG CGGGGAAGAG GTACCGGTGG CAGGCGAGAT CAAAGCCGAC CTGCGCACCG TCAACCATAT TGTCACGCAG GCCATCCGGC AGCTGCGGCA GTTGCGGGTG GATATGCCTG GCTGGCGTAA GATCTTCGAG GGAAAACGCT TTCTGTATGA GCTGCCGTGG TTCATGGTGG TCGGCAGTCC CGGCGACGGC AAAACCACGG CCCTGCTGAA CACCGGATTG CAGTTCCCGC TGGCGGAGCA AATGGAGCAG ACTTCGCGCA TCCTGACAGT ACCGGGTGGC GGCACGCTAC ACTGCGACTG GTGGTTTACC AACGAAGCGG TGTTGATTGA TACCGCCGGA CGCTACGCCC GCCACGATGA CGGCGGAGAA GTGAGCGCCG CGCAGCGTAA CGCCGGAGAG TGGCAGGGCT TTCTCGGTCT GCTGCGTAAA CATCGCCCCG GCGCGCCGCT TAACGGCGTG ATCCTGACGC TAAACGTGGC GGATTTAACC GCACAGTCAC CGGCGGAACG CCTGGCGGCC TGCGCCGCTC TGCGGGCGCG ACTGGCAGAA CTGCGCGAGA CCCTGGGGAT TCGCTTTCCG GTCTATCTGG TGGTCACCAA AATGGATTTG TTGCCGGGGT TCAGCGAGTA TTTTCGCACG CTGACCAGCC ATCTTCGCGC ACAAATCTGG GGCTTTACGT TGCCGTACAG CCGCAGGCGA AAAGCGGGCG ACCCGCAGGC GCTGCACGCC GCCTGCGCGC AGGAGCTGGC GCGCCTGACG CTGCGGCTGG ATCAGGGACT GGATACCCGG TTACAGGAAG AGTACGACCT TAAAAGCCGC CAGCGGCTGT ATACCTTCCC GCGTGAGTTC GCCGCCCTCG GCGAGCCGTT GCTGGAGGCT ATTGAACAGA TCTTCCTCGA TTCAAAATTC GATGCCACGC AACTGAATAA CACGCTGCGC GGGGTGTTTT TCACCAGCGC CGCGCAGGCG CAGGCCGACG CCGTGGCCGA CCAGTTGAGT ATCTGGCAGC GCTTTGTCCG GGCGATAAGA ACCGCCCGTG GCGAATCATC CGCCTCTCTC CCGCACGCTC TGCCGGACGG CAACCGCAGC TACTTTCTGC ATGACCTGCT GACACAGTTT ATTTTCCGTG AAGCGCACCT GGTGGAGCCA AACCTCCAGT GGGCCTGGCG TTACCGCCTG CTGCGCCTCG GCGGGCACCT GCTGGTACTG GTGCTGGCAT TCCTGTTGTG GCAGGGGATG CAGACCAGCC AGCAGACCAA CGGCGACTAT CTGAATGAAA TCAGCGCCCG CGCGACCCGG CTGGACGGTG AAGTGAAAGC CTACACCGGT AAACCGGCGA TGGCTCCCGT CCCGGCACTG CTGGATAGCG CAAGGGAACT GTCCGCCTGG CCGGAACTGG ACCCGGACGC GCCGCCGCTG ACCTGGCGCT ACGGCCTGTA CAGCGTACCG CCGGTAACCG ACAGCGTGGC GTCGCTGTAC AACCGTCTGC TGGATCAACT GCTGCTGCCG CCGCTGGTGA AACGGATGGA GTATGTGCTG GCGGACGCCA TTGCCCGTCA GGACAGTAAA GCTGCGTATG ATGCCCTGCG CATCTATCTG CTACTGAATC TGGATAAAGA TCACGAAGAT AAATACAACG CGGCGGAGAT CCAGTCGTGG GTGGTTAACG ATCTGGGGAA CAGCGACAGC GTGGCCGGGT TCGGCGGGCG CGCCGCCGTG CTGACGCATA TCGAAGCGCT GTTTGACGGC AGCCGGGTGG TGCATTCACC GTATGAGAAA AATGAGGCAC TGATCCGCCA GGCGCGGGCA TTCCTCGACG GTCACACCAG TACCGAGCGT ATCTATGCGC GGGCGCTGGC GGCGATGGAG AGCGAAGCGC CGCAGGAGTT CACGCTGGTA CGCGCCGTCG GCGCGGATGC GGGAACGGTG TTTGTGCGTA GCAACGGCGC GCCGCTGGAT CGGGGCGTGC CGGGTATTTT TACCCGTGAA GGATACCGGG AGCTGTTCGA CAAACGATTA CCGGAATTTG TGGCGGCGGC GACGGCGAAC GATGGCTGGG TGATGGGCCG GGAGAGTACG CCAAAAAAGC TGACTGACAG CCTGCGCAGC CAGATACCGG GGCAGGAGCA GTCTGTCGCC CGCGAAGTCC GCCGTTTGTA CCTGACGGAA TATGCCCGCC GCTGGCAGGA TTTTCTGGAC AGTATCCATA GTATCAACAG TGCCGGGGAA GAGGGCAGTT CCGGCCTGGC CTATGATTTA CAGGTGCTGC GCACCCTGGC GTCGCCGGAC TCACCGCTGA TGCGGCTGGG AAAAGCGGTG GTGGAGCAGA CCACGCTGGT GCCGCCGCCG GACCCGCAGG CCAGACAGAA ACAACTGGCG CAGCGCGCAT CCGGTAACGC GGGGAAAGTG GTACAGACGG CAAAACTGTT CCAGGATATT CACCCGGAAG AACGGCTGGA AAAAACGCTG GTGGATGATC GTTTCGCCGC GCTGCGCGAG GTCATTGCCG GGCGGACGGA CGGCGGACAG AGCGGCGGTG GGACGATGCA GATCGCTTCG CTGCTGACCA TGCTCAACGA GTATTACACC CAACTGACCA TTGCTGATAG CGCGCTGGCG GCGGGGACGT TGCCAGCGCG CATTACTGCC GCAGACAAGT TGCAACTGGA GGCGGCGAAA CTGCCTGCGC CGCTGAAAAA CATCCTGCTG GATCTGACGA AGCAGGGAAC GCGCAAAATC AACGCCGGGA CCGGCGACGT GCTGAACACC CAGATGGAGG CGATGATGGG CGACGACTGC CGTGACGCCA TCGACGGGCG TTATCCGTTC GCCGACAGCC CGCAGGAGGT CAGCGCCGAG GACTTTAACC GCATCTTCGC CAGCGGCGGC GTACTGGATG CTTTCTGGAG CAAACAACTG GCTCCGCTGG CGGACACCGC CAGCGACCCG TGGCGCTACA AACCGACCGA AGGCAACATG ACATTGCAGG GGCCGGATTT AACGCCGTTT CAGCAGGCGA AGCAGATCCG CAGCGTGTTT TTTAACAGCG AGGGCGGGAA AAAATTTTCC TGGTCGATGC AGATTAGCGT GGTGGATATG GACCCGGCCA TCACGGAACT GGTGATTGAT ATCGACGGCC AGGTGCTGCG CTACGCCCAT GGTCCGGACC GGCCCCTGAA AGTGACGTGG CCGGGACCGC GCAACGGCTC GATGGCGGAA ATCACCGCCA GCCCGCGTAT TCGCCAGGAC ACCTCAACGC TACTGACCGG CGGGCCGTGG GCGCTGTTTC ATCTGCTGGA CGCCGGAATG GTACAGGAAA CGGCGGTGCG GGGGCGCCAA TTGGTGGAAT ATGATTTTGA CGGTCGCCGG GTGGTGCTGG AAATCACTGC CGGGCGGGAT TTTAACCCGG TCAGCCGGGA GCTGTTGCAG AACTTCAGTT GCCCGGCGAG GGCGCTGTAA
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Protein sequence | MQKFLSLLFS RRALAVVGVL VLALLVWFVG PLVSFDTLRP LASVGSRVVT IALLLMLLVL WLVNWSMSII GISVLCLAIG FVTPLLALGD VHPFAPLWVR LTLIGFILLM YALYGLYRLW RALRMDEQLL RRFLHPRGEE VPVAGEIKAD LRTVNHIVTQ AIRQLRQLRV DMPGWRKIFE GKRFLYELPW FMVVGSPGDG KTTALLNTGL QFPLAEQMEQ TSRILTVPGG GTLHCDWWFT NEAVLIDTAG RYARHDDGGE VSAAQRNAGE WQGFLGLLRK HRPGAPLNGV ILTLNVADLT AQSPAERLAA CAALRARLAE LRETLGIRFP VYLVVTKMDL LPGFSEYFRT LTSHLRAQIW GFTLPYSRRR KAGDPQALHA ACAQELARLT LRLDQGLDTR LQEEYDLKSR QRLYTFPREF AALGEPLLEA IEQIFLDSKF DATQLNNTLR GVFFTSAAQA QADAVADQLS IWQRFVRAIR TARGESSASL PHALPDGNRS YFLHDLLTQF IFREAHLVEP NLQWAWRYRL LRLGGHLLVL VLAFLLWQGM QTSQQTNGDY LNEISARATR LDGEVKAYTG KPAMAPVPAL LDSARELSAW PELDPDAPPL TWRYGLYSVP PVTDSVASLY NRLLDQLLLP PLVKRMEYVL ADAIARQDSK AAYDALRIYL LLNLDKDHED KYNAAEIQSW VVNDLGNSDS VAGFGGRAAV LTHIEALFDG SRVVHSPYEK NEALIRQARA FLDGHTSTER IYARALAAME SEAPQEFTLV RAVGADAGTV FVRSNGAPLD RGVPGIFTRE GYRELFDKRL PEFVAAATAN DGWVMGREST PKKLTDSLRS QIPGQEQSVA REVRRLYLTE YARRWQDFLD SIHSINSAGE EGSSGLAYDL QVLRTLASPD SPLMRLGKAV VEQTTLVPPP DPQARQKQLA QRASGNAGKV VQTAKLFQDI HPEERLEKTL VDDRFAALRE VIAGRTDGGQ SGGGTMQIAS LLTMLNEYYT QLTIADSALA AGTLPARITA ADKLQLEAAK LPAPLKNILL DLTKQGTRKI NAGTGDVLNT QMEAMMGDDC RDAIDGRYPF ADSPQEVSAE DFNRIFASGG VLDAFWSKQL APLADTASDP WRYKPTEGNM TLQGPDLTPF QQAKQIRSVF FNSEGGKKFS WSMQISVVDM DPAITELVID IDGQVLRYAH GPDRPLKVTW PGPRNGSMAE ITASPRIRQD TSTLLTGGPW ALFHLLDAGM VQETAVRGRQ LVEYDFDGRR VVLEITAGRD FNPVSRELLQ NFSCPARAL
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