Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0255 |
Symbol | |
ID | 6871444 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 275021 |
End bp | 276784 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 642783500 |
Product | endochitinase |
Protein accession | YP_002214194 |
Protein GI | 198242676 |
COG category | [R] General function prediction only |
COG ID | [COG3979] Uncharacterized protein contain chitin-binding domain type 3 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 64 |
Fosmid unclonability p-value | 0.942643 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGATTGC AAAAAACACT GGCGCTCAGC GCCGTGGCGG CAGGAATCAT GTTGAGCTTA TCCGGTGCGC AGGCCGCGCC GCTGCTTAGC AGTAGTGAGC CAATGACCAT CAACGCCAGC GATCTGGCGG CGAAAGAGAA AGCGCTGACG GATTTTCCGT TAATGGAGGC AGTGAAATCC TCTATCCAGA CGTTGGATAA CAGCGCGGTC GAACAAATCG AACCGGGGCG CGCCGCTAAC CCGGCAAACG TAAAACGCGT TGAAAGTATT CTGAAAGAGG CCGACTGGGA TTATCTGTTC CCGATGCGCG CGCCGGAATA CACTTATTCT AACTTCCTGA AAGCGATAGG TAAATTCCCG GCGGTTTGTG GTACCTACAC CGATGGACGC GATAGCGACG CTATCTGCCG TAAAACCCTG GCTACTATGT TTGCGCATTT TGCCCAGGAG ACGGGCGGTC ACGAAAGCTG GCGTGACATT CCGGAATGGC GCCAGGCGCT GGTCTATCTG CGCGAAGTCG GCTGGACAGA AGGGCAGAAA GGCGGCTACA ACGGCGAATG TAACCCGGAT GTATGGCAGG GCCAGACCTG GCCGTGCGGT AAAGATAAGG ACGGCGATTT CCTCAGCTAT TTTGGTCGCG GGGCAAAACA GCTTTCTTAT AACTACAACT ATGGGCCTTT CTCTGACGCG ATGTATGGCG ACGTTCGCCC TCTGCTGGAT AAACCCGAGC TGGTGGCGGA TACCTGGATG AACCTGGCGA GCGCCGTCTT CTTCTTTGTG TATCCGCAGC CGCCGAAGCC GTCTATGCTA CATGTGATTG ACGGTACCTG GCAGCCAAAC GATCGCGATA AAGCAAACGG CCTGGTATCA GGTTTCGGCG TCACTATTCA GATCATCAAT GGCGGCGTGG AGTGCGGCGG CGCAGATGAG AATGCGCAGT CGCTTAACCG CATCGCCTAC TACAAAGAGT TTGCCAACTA CCTGAAAGTG CCGGTGCCGG CGGACGAAGT GTTGGGCTGT AAAAAGATGA AGCAGTTCGA TGAAGGCGGC GCTGGCGCGT TACCGATCTA TTGGGAACAA GACTGGGGCT GGAGCGCCGA TACTGCGGAC GGTAAAACCT ATTCCTGCCA GTTAGTGGGA TATCAGACGC CGTATACCGC CTTTAAAGAG GGCGACTACA CGAAATGTGT ACAGCATTAT TTCAACGTTA ATGTCGTCGA TGATAACGGA ACCACTGAAC CGGATGTCAC GCCAACTCCG GCGCCAGTGA CGGATGAAAA CGTGGCGCCA GTCGCGCGCA TTGCCGGGCC GGTCGGGGCG GTGGAAGCTG GTAGCCCGGT TTCACTCAGC GCGGAAGGAT CGACCGACGC GAATGGCGAC AAGCTCACCT ATACCTGGAT GTCGCAGGAT GGCAAAACGC TGAGCGGCCA GGATAAAGCC GTTGTGATTT TCAACGCGCC GGATGTCACT CAGAACACCC AGTATGTGGT GAATCTGACC GTTAGCGACG GTACGCTCTC CAGTACAGCG GTTTATACGC TGAATGTGAA AGCGAAGGCC GCCGCTGCGG ATGACGAAGA TAAGACCACC AGCTATCCTG CCTGGAGCAG CAGCCAGAAA TGGAATCCGG GCGACATCGT TAACAGTAAT GGCGCATTGT ACCAGTGCAA ACCGTTCCCG GAAGGCTCAT GGTGTAATGT TGCGCCTGCC TACTATGAGC CCGGTGTAGG GATTGCCTGG GCCGATGCAT GGAACGCATT GTAA
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Protein sequence | MGLQKTLALS AVAAGIMLSL SGAQAAPLLS SSEPMTINAS DLAAKEKALT DFPLMEAVKS SIQTLDNSAV EQIEPGRAAN PANVKRVESI LKEADWDYLF PMRAPEYTYS NFLKAIGKFP AVCGTYTDGR DSDAICRKTL ATMFAHFAQE TGGHESWRDI PEWRQALVYL REVGWTEGQK GGYNGECNPD VWQGQTWPCG KDKDGDFLSY FGRGAKQLSY NYNYGPFSDA MYGDVRPLLD KPELVADTWM NLASAVFFFV YPQPPKPSML HVIDGTWQPN DRDKANGLVS GFGVTIQIIN GGVECGGADE NAQSLNRIAY YKEFANYLKV PVPADEVLGC KKMKQFDEGG AGALPIYWEQ DWGWSADTAD GKTYSCQLVG YQTPYTAFKE GDYTKCVQHY FNVNVVDDNG TTEPDVTPTP APVTDENVAP VARIAGPVGA VEAGSPVSLS AEGSTDANGD KLTYTWMSQD GKTLSGQDKA VVIFNAPDVT QNTQYVVNLT VSDGTLSSTA VYTLNVKAKA AAADDEDKTT SYPAWSSSQK WNPGDIVNSN GALYQCKPFP EGSWCNVAPA YYEPGVGIAW ADAWNAL
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