| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0253 |
|---|
| Symbol | dnaE |
|---|
| ID | 6872490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 270387 |
|---|
| End bp | 273869 |
|---|
| Gene Length | 3483 bp |
|---|
| Protein Length | 1160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 642783498 |
|---|
| Product | DNA polymerase III subunit alpha |
|---|
| Protein accession | YP_002214192 |
|---|
| Protein GI | 198243100 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.783595 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC CACGTTTCGT TCACCTGCGG GTGCACAGCG ACTACTCTAT GATCGATGGG
CTGGCGAAGA CCGGGCCGCT GGTGAAAAAG GCGGCCTCAT TAGGTATGCC TGCGCTGGCG
ATCACCGATT TTACCAACCT CTGCGGTCTG GTGAAGTTCT ACGGAGCGGG TCATGGCGCG
GGCATTAAAC CCATCGTCGG GGCGGACTTT AACGTTCACA ACGAACTGCT GGGAGATGAG
CTGACTCATC TGACGGTACT GGCGGCGAAT AATACGGGAT ACCAGAACCT GACGTTGCTG
ATCTCGAAAG CGTATCAGCG CGGCTACGGC GCGGCAGGCC CGATTATCGA GCGCGACTGG
CTGGTAGAGC TTAAAGAAGG TTTGATCCTG CTTTCCGGCG GGCGCATGGG CGACGTAGGC
CGCTGTCTGC TACGCGGCAA CCAGGCGCTG GTGGAGGAGT GCGTTGCTTT CTATGAAGCG
CATTTTCCCG ATCGCTACTT TCTGGAACTG ATCCGCACCG GCAGACAGGA TGAAGAGACT
TATCTCCATG CTGCGGTTGA ACTGGCTGAG GCACGTGGTT TGCCGGTTGT CGCGACAAAC
GATGTCCGTT TCCTTGAAAG CGATGATTTT GACGCCCATG AGATTCGTGT CGCGATCCAC
GACGGTTTCA CGCTCGACGA TCCTAAACGT CCACGCAATT ATTCACCGCA GCAGTATATG
CGCAGTGAAG AAGAAATGTG CGAGCTGTTC TCCGATATTC CGGAGGCGCT GGAAAATACG
GTGGAGATTG CCAAACGCTG CAACGTAACG GTGCGTCTGG GTGAATATTT CCTGCCGCAG
TTCCCGACCG GCGATATGAC CACCGAAGAT TATCTGGTCA AAAAAGCGAA AGAGGGGCTG
GAAGAGCGTC TGGCTTTCCT GTTTCCGGAC GAAGAAGAGC GCAAAAAGCG TCGCCCGGAA
TATGACGAGC GTCTGGATAT TGAACTACAG GTTATCAACC AGATGGGGTT CCCTGGCTAC
TTCCTCATCG TGATGGAGTT TATCCAGTGG TCAAAAGATA ACGGCGTGCC GGTAGGGCCG
GGACGTGGTT CCGGGGCTGG TTCGCTGGTG GCCTACGCGC TGAAAATTAC CGACCTTGAT
CCGCTGGAAT TTGACCTGCT GTTCGAACGT TTCCTGAACC CGGAACGTGT CTCGATGCCT
GACTTCGACG TTGACTTCTG TATGGAGAAA CGCGACCAGG TGATTGAGCA CGTCGCAGAC
ATGTACGGGC GTGATGCGGT ATCGCAGATT ATCACCTTCG GTACGATGGC GGCGAAAGCC
GTTATCCGCG ATGTGGGCCG CGTGCTGGGG CATCCGTACG GTTTTGTCGA TCGTATCTCG
AAGCTGGTGC CGCCCGATCC GGGCATGACG CTGGCAAAAG CCTTTGAAGC GGAACCGCAA
CTGCCGGAAA TTTACGAGGC GGATGAAGAG GTCAGAGCGC TGATCGATAT GGCGCGTAAG
CTCGAAGGCG TCACGCGTAA CGCCGGTAAG CACGCTGGCG GCGTGGTCAT CGCGCCGACC
AAAATTACCG ACTTTGCGCC GCTGTACTGC GATGAAGAGG GCAAGCATCC GGTTACCCAG
TTTGATAAAA GTGACGTGGA ATATGCCGGG CTGGTGAAGT TCGACTTCCT CGGTTTGCGT
ACGCTGACCA TCATCAACTG GGCGCTGGAG ATGATCAACA AGCGGCGCGA GAAAAACGGC
GAGCCGCCGC TGGATATCGC CGCCATTCCG CTGGATGACA AGAAAAGCTT CGACATGCTG
CAGCGCTCGG AAACCACGGC GGTCTTCCAG CTTGAATCGC GCGGCATGAA AGATCTGATC
AAACGTCTGC AGCCGGACTG CTTTGAAGAT ATGATCGCAC TGGTGGCCCT GTTCCGTCCC
GGCCCGTTGC AGTCAGGGAT GGTAGATAAC TTCATCGACC GTAAGCACGG TCGTGAAGAA
CTCTCTTACC CGGACGTTCA GTGGCAGCAT GAAAGCCTGA AGCCGGTACT GGAGCCGACC
TACGGCATCA TTCTGTATCA GGAACAGGTG ATGCAGATTG CCCAGGTACT TTCCGGGTAT
ACTCTCGGCG GCGCGGATAT GCTGCGTCGT GCGATGGGTA AGAAAAAGCC GGAGGAGATG
GCCAAACAGC GTTCCGTTTT TGAAGAGGGC GCGAAAAAGA ACGGTATCGA CGGCGAACTG
GCGATGAAAA TCTTTGACCT GGTGGAGAAA TTCGCCGGTT ACGGGTTTAA CAAATCGCAC
TCCGCCGCTT ATGCGCTGGT TTCTTACCAG ACGCTATGGC TAAAGGCGCA CTATCCGGCT
GAATTTATGG CGGCGGTAAT GACCGCCGAT ATGGATAACA CCGAGAAGGT CGTCGGCCTG
GTGGACGAGT GCTGGCGGAT GGGACTGAAA ATTCTGCCGC CGGATATTAA CTCCGGATTG
TACCATTTCC ACGTTAACGA TGAGGGCGAG ATCGTCTACG GCATCGGCGC GATCAAAGGC
GTCGGCGAAG GGCCGATCGA AGCGATCATC GACGCGCGTA ATCAGGGCGG CTATTTCCGC
GAGCTGTTTG ATCTGTGCGC GCGGACCGAC ACCAAAAAGC TCAACCGCCG GGTGCTGGAA
AAGCTGATCA TGTCCGGGGC GTTCGACCGC CTGGGGCCGC ACCGCGCCGC GCTGATGAAC
TCATTGGGCG ATGCGCTGAA AGCCGCCGAC CAGCACGCCA AAGCGGAAGC TATCGGTCAG
GCGGATATGT TCGGCGTACT GGCGGAAGAG CCGGAGCAAA TCGAACAATC CTATGCCAGC
TGCCAGCCGT GGCCGGAGCA GGTGGTGTTA GATGGGGAAC GTGAAACGTT GGGGCTGTAC
CTGACGGGCC ACCCTATCAA TCAGTATTTA AAAGAAATTG AGCGCTATGT CGGCGGGGTA
AGGCTCAAAG ACATGCATCC GACAGAACGT GGTAAAGTCA CCACGGCTGC GGGGCTCGTG
ATTGCCGCAA GGGTTATGGT CACCAAGCGC GGCAATCGTA TCGGCATCTG TACGCTGGAT
GACCGTTCCG GGCGTCTGGA AGTGATGTTA TTTACCGACG CGCTGGATAA ATACCAGCAG
TTGCTGGAAA AAGACCGCAT ACTTATCGTC AGCGGACAGG TCAGCTTTGA TGACTTCAGC
GGGGGGCTTA AAATGACCGC CCGCGAAGTG ATGGATATTG ACGAAGCTCG CGAAAAATAC
GCTCGCGGGC TTGCTATCTC GCTGACGGAC AGGCAAATTG ATGACCAGCT TTTAAACCGA
CTCCGTCAGT CTCTGGAACC CCACCGCTCG GGGACCATTC CAGTACATCT CTACTATCAG
AGGGCGGATG CGCGAGCGCG GCTGCGTTTT GGCGCAACGT GGCGTGTCTC TCCGAGCGAT
CGTTTACTTA ACGATCTGCG TGGCCTCATT GGTTCGGAGC AGGTGGAACT GGAGTTTGAC
TAA
|
|---|
| Protein sequence | MSEPRFVHLR VHSDYSMIDG LAKTGPLVKK AASLGMPALA ITDFTNLCGL VKFYGAGHGA
GIKPIVGADF NVHNELLGDE LTHLTVLAAN NTGYQNLTLL ISKAYQRGYG AAGPIIERDW
LVELKEGLIL LSGGRMGDVG RCLLRGNQAL VEECVAFYEA HFPDRYFLEL IRTGRQDEET
YLHAAVELAE ARGLPVVATN DVRFLESDDF DAHEIRVAIH DGFTLDDPKR PRNYSPQQYM
RSEEEMCELF SDIPEALENT VEIAKRCNVT VRLGEYFLPQ FPTGDMTTED YLVKKAKEGL
EERLAFLFPD EEERKKRRPE YDERLDIELQ VINQMGFPGY FLIVMEFIQW SKDNGVPVGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMEK RDQVIEHVAD
MYGRDAVSQI ITFGTMAAKA VIRDVGRVLG HPYGFVDRIS KLVPPDPGMT LAKAFEAEPQ
LPEIYEADEE VRALIDMARK LEGVTRNAGK HAGGVVIAPT KITDFAPLYC DEEGKHPVTQ
FDKSDVEYAG LVKFDFLGLR TLTIINWALE MINKRREKNG EPPLDIAAIP LDDKKSFDML
QRSETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIDRKHGREE
LSYPDVQWQH ESLKPVLEPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM
AKQRSVFEEG AKKNGIDGEL AMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKAHYPA
EFMAAVMTAD MDNTEKVVGL VDECWRMGLK ILPPDINSGL YHFHVNDEGE IVYGIGAIKG
VGEGPIEAII DARNQGGYFR ELFDLCARTD TKKLNRRVLE KLIMSGAFDR LGPHRAALMN
SLGDALKAAD QHAKAEAIGQ ADMFGVLAEE PEQIEQSYAS CQPWPEQVVL DGERETLGLY
LTGHPINQYL KEIERYVGGV RLKDMHPTER GKVTTAAGLV IAARVMVTKR GNRIGICTLD
DRSGRLEVML FTDALDKYQQ LLEKDRILIV SGQVSFDDFS GGLKMTAREV MDIDEAREKY
ARGLAISLTD RQIDDQLLNR LRQSLEPHRS GTIPVHLYYQ RADARARLRF GATWRVSPSD
RLLNDLRGLI GSEQVELEFD
|
|---|
| |