| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0190 |
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| Symbol | |
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| ID | 6872598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 202732 |
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| End bp | 205278 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642783437 |
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| Product | outer membrane usher protein FimD |
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| Protein accession | YP_002214131 |
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| Protein GI | 198243400 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.536682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAAAA GGCAACACCG GGTATTTTAT TTATCGCGCT GCGCTGTGTG TATCGCGCTG
GGCAGCACGT TCACACACGT TGCATGGGCG CGCGACTATT TCAATCCGGC ATTTATTGAA
AACCATGGGC AGGCGAGTCG CACAAGCGTC GATCTGTCGA CATTTGATAA CGACAAAAGC
CAGCTGCCTG GCACCTATTA CGTCACTATC AATATCAATA AAACAGAAAT CGGCGCACGA
AACGTTGATT TTCAACTCGC GACGCTCAGT GACGGTCAAC AGGCATTACA GGGCTGTTTA
CGGCTCCAGG AACTAAAAGA TAACGGCGTC AAAACCGACC TTTTTCCAAC GCTGGAGAGT
GAAAAAGGCT GCGTCGATCT CAGCGTTATC CCCGGCGCCA GCCAGCGGTT TGATTTTCAG
CAACAGGCAT TATCAGTAAG CATCCCGCAA CTCTACATCG CCAACAACGC ACGCGGCTAC
GTACCGCCGG AAAAGTGGCA GGAGGGGATT ACCGCGCTGA TGCTGAACTA CAGCTTCAGC
GGCTATAAAG AGTACGGTTC CAGTGAGGAT TCCGACGATG CGGAATCGAA GTATCTCGCT
CTCCAGCCGG GTTTTAACCT CGGGCCGTGG CGTTTTCGCA ACTACAGTAA CTGGAGTTCA
AATAACGGCG AGAGCGGTAG CTGGAACAGC GTTTATAACT ATTTACAGCG CGACATTATC
GCGCTGAAAA GCCAGTTCAC CGCCGGAGAC AGCAATACGC CATCCGACGT GTTCGACAGC
GTACCTTTTC GCGGCCTCCA GCTCACCTCT GACGATCAAA TGCAGCCCAA CAGCCAGCGT
GGTTACGCCC CGACGATTCG CGGCATCGCC CGCTCAAACG CGCAGGTTAT CGTGCGGCAA
AACGGCTATA TCGCCTATCA GACCGCCGTT TCGCCGGGCG AATTTGAAAT CAACGATATG
TTTCCCACCG GCAGCAACGG CGACTATGAC GTGACGGTAA AAGAAACCGA CGGCAGCGAA
CAGCACTTTA TCGTGCCCTA CTCTTCGCTG CCGATTCTGC AGCGCACCGG ACGGGCAAAA
TACAGCGTGA CCGTGGGTAA ATATCGCGAT TATAACAACC ACACGCTGGA CGACTTCGGC
CAGGCGACCC TGCTGTACGG CCTGCCGTGG GGCATCACCC TGTACGGCGG CAGCCAGATT
GCCGGCGATA AATACCAGTC CGTCGCCTTC GGCGTCGGGC AAAATATGCA GATGCTGGGG
GCCATTTCCC TGGACGGCAT CTGGTCGCAC GCCAAATTTG ACGATGGCCG CAAAGAAATC
GGGCAATCCT GGCGCGTCCG CTACAGCAAG GGCGTCGTCA GTACGGGCAC CACGTTTTCG
CTGGCCGGCT ATCGTTACGC CAGCGAAAAC TACAATTCGC TGAGCGAGGT GATCAACCCG
GACGACGATT TTTATGATAA CTACGGCAAG CGCCATAATC GTTTCGAAGC TTCGGTCAAC
CAGCAAATTA GCAATACGCT CGGTTCCTTA ACGCTAAGTT GGGTCAAAGA AGATTACTGG
CACAGCGCGC AGCAGATGGA ATCCCTGAGC GCCAGCTACA ACAATAGCTG GGGTCCGGTG
AGCTATACGC TGAGCTACAG CTATAACAAA AACACCTACC AGTACCGTTC GGACAATGAC
GATGATGACA ACGACGACGA TCGTTATAAC CAGAACGATC GGCTGTTCAC GCTGTCGCTG
CACGTTCCGT TTACGGTGTT CGATTCCAGG CTATACGCCA GCTATATGCT GAACACGCGT
AAGCACGATG CCACGGTGAA CAGCACCACC CTTAGCGGCA CCGCGCTGCG TGACAGAAAC
CTGAACTGGT CGTTACAGCA AAGCCACAGC ACACAAGACG GTGATTCCGG CGGGGTAAAC
GCCAGCTATA AAGGCACTTA TGCCAACCTC AACGCCGGTT ACAATCAGTC GCCAGATAGC
CAACAAGTCA GCTACGGCAT CAGCGGCGGC ATTCTGGCGC ACGAAAACGG TATTACCCTG
AGCCAGCCGA TTACCGGCGC GGCGATTTTA ATTAAAGCGC CCGGCGCCAG CGGCGTTTCG
GTTGAAAACC AGACCGGCGT CGCCACCGAC TTCCGGGGTT ATACGGTGAT CCCCAACGTC
ACGCCGTATT ATCGCTACGA TATCTCGCTC GACAGCAGCA CGTTTGCTGA CAACGTGGAT
ATTCCGCTCA ACAACCAGAC CGTCTACCCG ACGCGTAATG CGGTGGTGCG CGCGGCGTAT
GACACGCATA AGGGCTATCG CGTGTTGTTA ACGCTGACGC GCAGCAATGG CGAGCCCGTG
CCCTTTGGCG CGACGGCAAG CGTCGATGGG CAGGATGCGA ACCTGGCCAG TATCGTCGGC
GATAAAGGCC AGGTCTTCCT CAGCGGCCTG CCGGAAGAGG GCCTGCTGCT GGTGAACTGG
GGAAGCGCCT CTTGCCGCGC GGATTACCAC CTGGATATCA GCAAAAATAT GAACGGCATA
GTGATGGCGA ACGCCGTCTG CCAGTGA
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| Protein sequence | MRKRQHRVFY LSRCAVCIAL GSTFTHVAWA RDYFNPAFIE NHGQASRTSV DLSTFDNDKS
QLPGTYYVTI NINKTEIGAR NVDFQLATLS DGQQALQGCL RLQELKDNGV KTDLFPTLES
EKGCVDLSVI PGASQRFDFQ QQALSVSIPQ LYIANNARGY VPPEKWQEGI TALMLNYSFS
GYKEYGSSED SDDAESKYLA LQPGFNLGPW RFRNYSNWSS NNGESGSWNS VYNYLQRDII
ALKSQFTAGD SNTPSDVFDS VPFRGLQLTS DDQMQPNSQR GYAPTIRGIA RSNAQVIVRQ
NGYIAYQTAV SPGEFEINDM FPTGSNGDYD VTVKETDGSE QHFIVPYSSL PILQRTGRAK
YSVTVGKYRD YNNHTLDDFG QATLLYGLPW GITLYGGSQI AGDKYQSVAF GVGQNMQMLG
AISLDGIWSH AKFDDGRKEI GQSWRVRYSK GVVSTGTTFS LAGYRYASEN YNSLSEVINP
DDDFYDNYGK RHNRFEASVN QQISNTLGSL TLSWVKEDYW HSAQQMESLS ASYNNSWGPV
SYTLSYSYNK NTYQYRSDND DDDNDDDRYN QNDRLFTLSL HVPFTVFDSR LYASYMLNTR
KHDATVNSTT LSGTALRDRN LNWSLQQSHS TQDGDSGGVN ASYKGTYANL NAGYNQSPDS
QQVSYGISGG ILAHENGITL SQPITGAAIL IKAPGASGVS VENQTGVATD FRGYTVIPNV
TPYYRYDISL DSSTFADNVD IPLNNQTVYP TRNAVVRAAY DTHKGYRVLL TLTRSNGEPV
PFGATASVDG QDANLASIVG DKGQVFLSGL PEEGLLLVNW GSASCRADYH LDISKNMNGI
VMANAVCQ
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