Gene SeD_A0176 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0176 
Symbol 
ID6874468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp187790 
End bp188803 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content56% 
IMG OID642783423 
Product2-keto-3-deoxygluconate permease 
Protein accessionYP_002214117 
Protein GI198244320 
COG category 
COG ID 
TIGRFAM ID[TIGR00793] 2-keto-3-deoxygluconate transporter 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.145477 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones72 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATTGAAT ATAATCGTTA TGATTTTATT CAATCACAAC AAGCAACAGG CGGTAAGACC 
ATGAACATCA AAAAAGCAAT AGAGCGCGTA CCCGGCGGCA TGATGGTCGT ACCGCTCGTT 
ATTGGCGCAG TCATTAACAC CTTCGCCCCG CAGGCGCTTG AGATCGGCGG TTTTACCACT 
GCCTTATTTA AAAACGGCGC GGCACCGCTG ATTGGCGCTT TTCTGCTGTG TATGGGAGCC 
GGTATCAGTG TGAAAGCCGC GCCCCAGGCG TTATTGCAGG GCGGGACGAT TACGCTCACT 
AAGTTGCTTG TCACCATCGG CATTGGCCTG GGCGTGGAGC ATCTTTTCGG CGCGGAGGGT 
ATTTTTGGCC TGAGCGGCGT GGCGATTATC GCGGCGATGA GCAATTCAAA TGGCGGACTT 
TATGCTGCGC TGGTAGGCGA ATTCGGCAAT GAGCGCGACG TCGGCGCTAT CTCTATTTTG 
TCTCTTAATG ATGGCCCTTT CTTTACGATG ATTGCGCTGG GCGCGGCAGG GATGGCGAAC 
ATTCCCATTA TGGCGCTGGT GGCGGTGCTG GTTCCGCTGG TTATCGGCAT GATCCTCGGC 
AATCTTGATC CTCATATGCG CGATTTTTTG ACTAAAGGCG GCCCGCTGCT CATTCCTTTC 
TTTGCTTTTG CGCTGGGGGC GGGCATCAAC CTGGAAATGT TACTGCAAGG CGGACTTGCC 
GGAATTCTGC TCGGCGTGCT GACAACGTTC GTTGGCGGTT TCTTTAATAT TCGCGCAGAT 
CGTCTGGTTG GCGGAACTGG CATTGCCGGG GCGGCGGCCT CCAGCACCGC GGGTAATGCC 
GTTGCGACGC CGCTGGCTAT TGCGCAGGCC GACCCTTCGC TCGCCGAGGT GGCCGCTGCT 
GCCGCTCCGC TGATTGCCGC CTCGGTGATC ACCACGGCAA TCCTGACGCC AGTGTTGACC 
TCCTGGGTTG CAAAAAAACA GGCGCGTCAG GCTTCTTTGG AGAAAAACGC ATGA
 
Protein sequence
MIEYNRYDFI QSQQATGGKT MNIKKAIERV PGGMMVVPLV IGAVINTFAP QALEIGGFTT 
ALFKNGAAPL IGAFLLCMGA GISVKAAPQA LLQGGTITLT KLLVTIGIGL GVEHLFGAEG 
IFGLSGVAII AAMSNSNGGL YAALVGEFGN ERDVGAISIL SLNDGPFFTM IALGAAGMAN 
IPIMALVAVL VPLVIGMILG NLDPHMRDFL TKGGPLLIPF FAFALGAGIN LEMLLQGGLA 
GILLGVLTTF VGGFFNIRAD RLVGGTGIAG AAASSTAGNA VATPLAIAQA DPSLAEVAAA 
AAPLIAASVI TTAILTPVLT SWVAKKQARQ ASLEKNA