| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0139 |
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| Symbol | ddl |
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| ID | 6871651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 148227 |
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| End bp | 149084 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642783388 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_002214082 |
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| Protein GI | 198242528 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 0.517972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATA AAATCGCGGT CCTGTTGGGC GGAACCTCTG CGGAGCGGGA CGTTTCGTTA
AATTCCGGCG CGGCAGTGTT GGCCGGGTTA CGTGAAGGCG GTATTGATGC GCATCCCGTC
GATCCGCAAG AGGTCGATGT CGCGCAGCTT AAAGCAATGG GCTTTCAGAA GGTCTTTATT
GCGTTGCATG GCCGCGGCGT GATGGCCTCG GCGCTTTCCA TGGATAAACT GCGCAGTAAA
TTGCTGTGGC AGGGCGCGGG CTTACCGGTT GCGCCGTGGG TCGCATTGAC GCGCGCTGAG
TTTGAAAAAG GCCTTAGCGA AGAACAAAAA GCGCGAATTT CGGCGCTGGG TTTACCGCTG
ATCGTCAAAC CCAGCCGTGA AGGCTCCAGC GTCGGTATGA CGAAAGTAGT AGAAGAAAAT
GCTTTACAGG GTGCGTTATC ATTGGCTTTT CAGCATGATG ACGAAATACT GATTGAGAAA
TGGCTGTGCG GTCCGGAATT TACGGTGGCG ATAGTTGGCG AAGAAATTTT ACCGTCAATT
CGTATCCAAC CGGCAGGAAC CTTCTATGAT TATGAGGCGA AGTATCTCTC TGATGAGACT
CAGTATTTCT GCCCTGCCGG TTTAGATGCG TCCCAGGAAG CCGCGCTACA GTCTCTCGTC
CTGCAGGCAT GGAAAGCTTT AGGCTGCACG GGATGGGGGC GTATTGACGT CATGCTGGAC
AGCGATGGTC AGTTTTATCT GCTGGAAGCC AATACTTCTC CGGGGATGAC CAGCCATAGT
CTGGTGCCGA TGGCGGCGCG TCAGGCGGGA ATGAGCTTCT CGCAGTTAGT GGTACGAATT
CTGGAGTTGG CGGACTGA
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| Protein sequence | MADKIAVLLG GTSAERDVSL NSGAAVLAGL REGGIDAHPV DPQEVDVAQL KAMGFQKVFI
ALHGRGVMAS ALSMDKLRSK LLWQGAGLPV APWVALTRAE FEKGLSEEQK ARISALGLPL
IVKPSREGSS VGMTKVVEEN ALQGALSLAF QHDDEILIEK WLCGPEFTVA IVGEEILPSI
RIQPAGTFYD YEAKYLSDET QYFCPAGLDA SQEAALQSLV LQAWKALGCT GWGRIDVMLD
SDGQFYLLEA NTSPGMTSHS LVPMAARQAG MSFSQLVVRI LELAD
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