Gene SeD_A0122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A0122 
SymbolleuA 
ID6873686 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp127783 
End bp129354 
Gene Length1572 bp 
Protein Length523 aa 
Translation table11 
GC content55% 
IMG OID642783372 
Product2-isopropylmalate synthase 
Protein accessionYP_002214066 
Protein GI198244620 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0119] Isopropylmalate/homocitrate/citramalate synthases 
TIGRFAM ID[TIGR00973] 2-isopropylmalate synthase, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.624748 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAGC AAGTCATTAT TTTTGATACG ACCTTACGCG ACGGCGAACA AGCGTTACAG 
GCCAGCCTGA GCGCGAAAGA GAAGCTGCAG ATTGCCCTGG CCCTTGAGCG CATGGGTGTT
GATGTCATGG AAGTGGGCTT CCCGGTCTCT TCTCCGGGTG ATTTTGAATC CGTCCAAACC
ATCGCCCGCA CCATTAAAAA CAGCCGCGTT TGCGCCCTGG CGCGTTGTGT AGAAAAAGAC
ATTGACGTCG CGGCACAGGC GCTGAAGGTC GCCGACGCGT TTCGCATCCA TACTTTTATC
GCCACCTCGC CAATGCACAT CGCCACCAAA CTGCGCAGCA CGCTGGATGA GGTCATCGAA
CGCGCGGTAT ACATGGTTAA GCGGGCGCGT AATTACACTG ATGACGTAGA GTTCTCCTGC
GAAGATGCTG GCCGGACGCC TGTTGACGAT CTGGCGCGCG TGGTAGAAGC CGCTATAAAC
GCCGGCGCGA GAACCATTAA TATTCCCGAT ACCGTGGGCT ATACCATGCC GTTTGAGTTC
GCGGGAATCA TTTCCGGCCT GTATGAACGT GTCCCCAATA TCGACAAAGC TATCATCTCC
GTTCATACCC ACGACGATTT AGGGATAGCA GTAGGCAACT CGCTGGCGGC AGTACATGCG
GGCGCGCGTC AGGTTGAAGG CGCGATGAAC GGTATCGGAG AACGTGCCGG TAACTGCGCA
CTGGAAGAAG TGATCATGGC GATTAAAGTG CGCAAAGACA TCATGAATGT ACACACCAAC
ATCAATCACC ACGAAATCTG GCGCACCAGC CAGACCGTCA GCCAGATCTG TAACATGCCG
ATCCCGGCCA ACAAAGCGAT TGTCGGCAGC GGCGCTTTTG CCCACTCTTC CGGCATCCAC
CAGGATGGCG TCCTCAAGAA CCGCGAAAAC TATGAAATCA TGACGCCAGA GTCCATCGGT
CTGAACCAGA TACAGCTGAA CCTGACCTCC CGCTCTGGCC GTGCCGCCGT GAAACATCGC
ATGGAAGAGA TGGGTTACAA GGACACAGAC TACAACATGG ATCACCTGTA CGACGCGTTC
CTGAAGCTGG CGGACAAAAA AGGCCAGGTG TTCGACTATG ACCTGGAAGC GCTGGCGTTT
ATTAATAAAC AGCAAGAAGA ACCAGAGCAT TTCCGTCTGG ATTACTTCAG CGTGCAGTCC
GGCTCCAGCG ATATCGCCAC TGCTTCCGTG AAGCTGGCCT GTGGTGAAGA GATCAAGGCC
GAAGCGGCGA ACGGCAACGG CCCGGTCGAC GCCATCTATC AGGCGATTAA CCGCATCACT
GGCTACGACG TTGAGTTGGT TAAATACGAC CTGAACGCCA AAGGCCAGGG CAAAGACGCG
CTGGGTCAGG TCGATATCGT CGTGAACCAT CATGGTCGCC GCTTCCACGG CGTCGGGCTG
GCGACGGATA TCGTCGAATC CTCCGCCAAA GCGATGGTGC ACGTACTGAA CAATATCTGG
CGCGCCGCCG AAGTTGAAAA AGAATTGCAA CGCAAAGCTC AAAATAAAGA GAACAACAAG
GAAACCGTGT AA
 
Protein sequence
MSQQVIIFDT TLRDGEQALQ ASLSAKEKLQ IALALERMGV DVMEVGFPVS SPGDFESVQT 
IARTIKNSRV CALARCVEKD IDVAAQALKV ADAFRIHTFI ATSPMHIATK LRSTLDEVIE
RAVYMVKRAR NYTDDVEFSC EDAGRTPVDD LARVVEAAIN AGARTINIPD TVGYTMPFEF
AGIISGLYER VPNIDKAIIS VHTHDDLGIA VGNSLAAVHA GARQVEGAMN GIGERAGNCA
LEEVIMAIKV RKDIMNVHTN INHHEIWRTS QTVSQICNMP IPANKAIVGS GAFAHSSGIH
QDGVLKNREN YEIMTPESIG LNQIQLNLTS RSGRAAVKHR MEEMGYKDTD YNMDHLYDAF
LKLADKKGQV FDYDLEALAF INKQQEEPEH FRLDYFSVQS GSSDIATASV KLACGEEIKA
EAANGNGPVD AIYQAINRIT GYDVELVKYD LNAKGQGKDA LGQVDIVVNH HGRRFHGVGL
ATDIVESSAK AMVHVLNNIW RAAEVEKELQ RKAQNKENNK ETV