Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A0077 |
Symbol | caiC |
ID | 6873433 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 82381 |
End bp | 83934 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642783331 |
Product | putative crotonobetaine/carnitine-CoA ligase |
Protein accession | YP_002214025 |
Protein GI | 198244202 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATCG TTGGCGGACA AAACTTACGT CAGATGTGGG ACGACCTGGC CGGGGTGTAC GGAGATAAAA CGGCGTTAAT TTTCGAATCC TGTGAGGGAA TCGTTCGGCA GTTTAGCTAT GCTTCGCTCA ATGAAGAGAT TAACCGCACG GCGAACCTTT TTTATTCCTT AGGGATCCGC AAGGGTGATA GGGTCGCGCT GCATCTGGAT AACTGCCCGG AATTCATCTT TTGCTGGTTT GGACTGGCAA AAATCGGTGC CATTATGGTG CCGATTAATG CCCGCTTACT GGGCGAAGAA AGCGCCTGGA TCCTGCAAAA CAGCCAGGTG AGTCTGCTGG TTACCAGCGC CCAGTTTTAT CCTATGTACC GTGAAATACG CCAGGACAAT AGCACTCCGC TTAATCATAT CTGTCTGATT GGCGAGCAGC TTCCGGCTGA CGATGGCGTG AGCCACTTTT CCCAACTGCA AGCACGTCAA TCGGCCACGC TGTGCTATAC GCCCGTGTTA TCCACTGACG ATACGGCGGA AATTCTGTTT ACCTCCGGTA CCACCTCGCG TCCAAAAGGG GTGGTGATTA CCCACTATAA CCTGCGTTTT GCAGGCTACT ACTCTGCCTG GCAAATCGCC CTGCGCGATG ATGACGTGTA CATGACGGTG ATGCCCGCTT TTCATATCGA CTGTCAGTGT ACCGCCGCAA TGCCAGCCTT TTCCGCCGGC AGCACCTTTG TGCTGCTAGA GAAGTACAGC GCCAGAGCCT TCTGGGATCA GGTACGTAAA TATCAGGCGA CGGTGACCGA GTGCATTCCT ATGATGATCC GCACGCTGAT GGTCCAGCCC GCCGCACCAA CGGACAGGCA GCATCATCTG CGCGAAGTGA TGTTCTATCT CAATCTATCC GCGCAAGAAA AAGACGCCTT TACCGAACGC TTTGGCGTCA GGCTGCTGAC CTCTTATGGT ATGACTGAAA CCATTGTCGG AATTATTGGC GACCGTCCCG GAGACAAACG ACGCTGGCCT TCCATTGGTC GCGTGGGTTT TAGCTATGAA GCTGAAATTC GCGACGATCA AAATCGCCCG CTGCCCGCCG GAGAAATTGG CGAAATCTGT ATTAAAGGCA TCCCCGGCAA GACTATCTTC AAAGAGTATT ACATGCAGCC GGAGGCAACC GCCAGGGCGC TGGAACCAGA GGGCTGGTTA CATACCGGTG ATTCGGGTTA CCAGGATGAG GATGGCTATT TCTATTTTGT CGACAGACGC TGCAACATGA TTAAACGCGG CGGGGAAAAT GTCTCCTGCG TCGAGCTGGA AAATATTATT TCTGCGCATC CGAAAATTCA GGACATTGTG GTGGTTGGTA TTAAAGACGC GATCCGTGAT GAGGCCATTA AAGCGTTTAT CGTCCTTAAT GAAGGTGAAA CATTAAGCGA AGCCGAGTTT TTCAGCTTTT GCGAAAACAA TATGGCGAAA TTCAAGGTTC CCTCTTTTAT GGAGATCAGA ACCGACCTGC CGCGCAACTG TTCAGGAAAA ATAATCAAAA AAAATCTGAA ATAA
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Protein sequence | MDIVGGQNLR QMWDDLAGVY GDKTALIFES CEGIVRQFSY ASLNEEINRT ANLFYSLGIR KGDRVALHLD NCPEFIFCWF GLAKIGAIMV PINARLLGEE SAWILQNSQV SLLVTSAQFY PMYREIRQDN STPLNHICLI GEQLPADDGV SHFSQLQARQ SATLCYTPVL STDDTAEILF TSGTTSRPKG VVITHYNLRF AGYYSAWQIA LRDDDVYMTV MPAFHIDCQC TAAMPAFSAG STFVLLEKYS ARAFWDQVRK YQATVTECIP MMIRTLMVQP AAPTDRQHHL REVMFYLNLS AQEKDAFTER FGVRLLTSYG MTETIVGIIG DRPGDKRRWP SIGRVGFSYE AEIRDDQNRP LPAGEIGEIC IKGIPGKTIF KEYYMQPEAT ARALEPEGWL HTGDSGYQDE DGYFYFVDRR CNMIKRGGEN VSCVELENII SAHPKIQDIV VVGIKDAIRD EAIKAFIVLN EGETLSEAEF FSFCENNMAK FKVPSFMEIR TDLPRNCSGK IIKKNLK
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