| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0073 |
|---|
| Symbol | carB |
|---|
| ID | 6871253 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 76863 |
|---|
| End bp | 80090 |
|---|
| Gene Length | 3228 bp |
|---|
| Protein Length | 1075 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642783328 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_002214022 |
|---|
| Protein GI | 198241932 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.841404 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAC GTACAGATAT AAAAAGCATC CTGATTCTGG GCGCGGGCCC GATTGTTATC
GGTCAGGCGT GTGAGTTTGA CTACTCCGGC GCTCAGGCGT GTAAAGCCCT GCGCGAAGAG
GGCTATCGCG TCATTCTGGT GAACTCCAAC CCGGCCACCA TCATGACCGA CCCGGAAATG
GCCGATGCCA CCTACATCGA GCCGATTCAC TGGGAAGTGG TGCGCAAAAT CATTGAAAAA
GAGCGTCCGG ATGCGGTGCT GCCGACCATG GGCGGCCAGA CCGCGCTGAA CTGCGCGCTG
GAGCTGGAGC GGCAGGGCGT GCTGGAAGAG TTCGGCGTCA CCATGATTGG CGCCACCGCC
GACGCCATTG ATAAAGCCGA AGACCGTCGT CGCTTCGATA TCGCGATGAA GAAAATTGGT
CTCGACACCG CGCGTTCCGG TATCGCACAC ACTATGGAAG AAGCGCTGGC GGTTGCCGCT
GACGTGGGCT TCCCGTGCAT CATCCGTCCG TCCTTTACCA TGGGCGGCAC CGGCGGCGGT
ATCGCTTACA ACCGTGAAGA GTTCGAAGAA ATCTGCGAAC GCGGTCTGGA TCTCTCGCCA
ACCAACGAAC TGCTGATTGA TGAATCGCTG ATCGGCTGGA AAGAGTACGA GATGGAAGTG
GTGCGTGATA AAAACGACAA CTGCATCATC GTCTGCTCTA TCGAAAACTT CGATGCGATG
GGTATCCACA CCGGTGACTC CATCACCGTG GCCCCGGCGC AGACTCTGAC CGACAAAGAA
TACCAAATCA TGCGTAACGC CTCGATGGCG GTTCTGCGTG AAATCGGCGT CGAAACCGGC
GGTTCTAACG TCCAGTTCGC AGTGAACCCG AAAAACGGCC GTCTGATCGT TATCGAAATG
AACCCGCGCG TATCCCGCTC CTCGGCGCTG GCGTCGAAAG CCACCGGTTT CCCGATTGCC
AAAGTGGCCG CCAAACTGGC GGTAGGTTAC ACCCTTGACG AACTGATGAA CGACATCACC
GGCGGGCGCA CTCCGGCCTC CTTCGAGCCG TCCATCGACT ATGTGGTTAC TAAAATTCCG
CGCTTTAACT TTGAGAAATT CGCCGGTGCC AACGACCGTC TGACCACCCA GATGAAATCG
GTCGGAGAAG TGATGGCGAT TGGTCGCACC CAGCAGGAAT CCCTGCAAAA AGCGCTGCGC
GGCCTGGAAG TCGGCGCCAC CGGTTTTGAC CCGAAAGTGA GCCTCGACGA CCCGGAAGCG
CTGACCAAAA TCCGCCGCGA GCTGAAAGAC GCGGGCGCAG ATCGTATCTG GTACATCGCC
GATGCTTTCC GTGCGGGCTT GTCTGTGGAT GGCGTCTTTA ACCTGACCAA CATCGACCGC
TGGTTCCTGG TGCAAATTGA AGAGCTGGTG CGTCTGGAAG AGAAAGTGGC TGAAGTCGGG
ATTACTGGCC TCAACGCCGA CTTCCTGCTT CAGCTCAAGC GTAAAGGGTT TGCCGATGCG
CGTCTGGCAA AACTGGCTGG CGTACGCGAG GCGGAAATCC GTAAGCTGCG TGATCAGTAT
GACCTGCACC CGGTTTACAA ACGCGTGGAT ACCTGCGCGG CGGAATTCGC CACCGATACC
GCCTACATGT ACTCCACTTA TGAAGATGAG TGCGAAGCGA ACCCGTCCGT TGACCGCGAT
AAAATCATGG TCCTCGGCGG CGGCCCGAAC CGTATCGGCC AGGGTATCGA ATTTGACTAC
TGCTGCGTAC ACGCCTCGCT GGCGCTGCGC GAAGACGGTT ACGAGACCAT CATGGTCAAC
TGTAACCCGG AAACCGTCTC CACCGACTAC GACACTTCCG ACCGTCTGTA CTTCGAGCCG
GTGACGCTGG AAGACGTGCT GGAAATCGTG CGCATCGAGA AGCCGAAAGG CGTTATCGTG
CAGTACGGCG GCCAGACCCC GCTGAAGCTG GCGCGCGCGC TGGAAGCGGC AGGCGTGCCG
GTTATCGGCA CCAGCCCGGA CGCCATCGAC CGCGCGGAAG ACCGCGAGCG CTTCCAGCAC
GCGGTTGACC GTCTGAAGCT GAAGCAACCG GCCAACGCCA CCGTCACCGC CATTGAACAG
GCTGTCGAAA AAGCGAAAGA GATCGGCTAC CCGCTGGTGG TGCGTCCTTC TTACGTGCTG
GGCGGCCGGG CGATGGAAAT TGTCTATGAC GAAGCCGATC TGCGTCGCTA CTTCCAGACA
GCGGTCAGCG TCTCTAACGA TGCGCCGGTG CTGCTGGACC GCTTCCTTGA TGACGCGGTT
GAAGTGGACG TGGACGCTAT CTGCGACGGC GAAATGGTGC TGATTGGCGG TATCATGGAG
CACATCGAGC AGGCGGGCGT ACACTCCGGC GACTCCGCCT GTTCCCTGCC GGCCTACACG
CTGAGCCAGG AAATTCAGGA CGTGATGCGC CAGCAGGTGC AGAAGCTGGC CTTCGAGTTG
CAGGTGCGCG GCCTGATGAA CGTGCAGTTT GCGGTGAAAG ACAACGAAGT CTATCTGATT
GAAGTCAACC CGCGTGCGGC GCGTACCGTA CCGTTCGTCT CCAAAGCCAC CGGCGTTCCG
CTGGCGAAAG TGGCGGCGCG CGTGATGGCC GGCAAATCGC TGACCGAGCA GGGCGTGACC
AAAGAAATTA TCCCGCCGTA CTACTCGGTG AAAGAAGTGG TGTTGCCGTT TAACAAATTC
CCGGGCGTTG ACCCGCTGTT AGGGCCAGAA ATGCGCTCCA CCGGGGAAGT GATGGGCGTG
GGCCGTACCT TCGCGGAAGC GTTCGCTAAG GCGCAGCTGG GCAGTAACTC CACCATGAAG
AAACAGGGCC GTGCGCTGCT CTCGGTTCGC GAAGGCGACA AAGAGCGCGT GGTGGATCTC
GCCGCTAAGC TGCTGAAACA GGGCTTTGAG CTGGATGCCA CCCACGGTAC GGCGATTGTG
CTGGGCGAAG CTGGTATCAA CCCGCGTCTG GTGAACAAGG TGCACGAAGG TCGTCCGCAC
ATTCAGGACC GTATCAAGAA TGGCGAATAT ACTTATATCA TCAACACCAC CGCAGGCCGC
CGCGCGATTG AAGACTCCAG GGTGATTCGC CGCAGCGCGC TGCAGTATAA AGTGCATTAT
GACACCACGC TGAACGGCGG TTTTGCAACG ACGATGGCGC TCAATGCCGA TGCCACCGAG
AAGGTAACCT CGGTGCAGGA AATGCACGCG CAGATCAAAA AGTCGTAA
|
|---|
| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRKIIEK ERPDAVLPTM GGQTALNCAL ELERQGVLEE FGVTMIGATA
DAIDKAEDRR RFDIAMKKIG LDTARSGIAH TMEEALAVAA DVGFPCIIRP SFTMGGTGGG
IAYNREEFEE ICERGLDLSP TNELLIDESL IGWKEYEMEV VRDKNDNCII VCSIENFDAM
GIHTGDSITV APAQTLTDKE YQIMRNASMA VLREIGVETG GSNVQFAVNP KNGRLIVIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDELMNDIT GGRTPASFEP SIDYVVTKIP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT QQESLQKALR GLEVGATGFD PKVSLDDPEA
LTKIRRELKD AGADRIWYIA DAFRAGLSVD GVFNLTNIDR WFLVQIEELV RLEEKVAEVG
ITGLNADFLL QLKRKGFADA RLAKLAGVRE AEIRKLRDQY DLHPVYKRVD TCAAEFATDT
AYMYSTYEDE CEANPSVDRD KIMVLGGGPN RIGQGIEFDY CCVHASLALR EDGYETIMVN
CNPETVSTDY DTSDRLYFEP VTLEDVLEIV RIEKPKGVIV QYGGQTPLKL ARALEAAGVP
VIGTSPDAID RAEDRERFQH AVDRLKLKQP ANATVTAIEQ AVEKAKEIGY PLVVRPSYVL
GGRAMEIVYD EADLRRYFQT AVSVSNDAPV LLDRFLDDAV EVDVDAICDG EMVLIGGIME
HIEQAGVHSG DSACSLPAYT LSQEIQDVMR QQVQKLAFEL QVRGLMNVQF AVKDNEVYLI
EVNPRAARTV PFVSKATGVP LAKVAARVMA GKSLTEQGVT KEIIPPYYSV KEVVLPFNKF
PGVDPLLGPE MRSTGEVMGV GRTFAEAFAK AQLGSNSTMK KQGRALLSVR EGDKERVVDL
AAKLLKQGFE LDATHGTAIV LGEAGINPRL VNKVHEGRPH IQDRIKNGEY TYIINTTAGR
RAIEDSRVIR RSALQYKVHY DTTLNGGFAT TMALNADATE KVTSVQEMHA QIKKS
|
|---|
| |