| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0066 |
|---|
| Symbol | citF |
|---|
| ID | 6873719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 70874 |
|---|
| End bp | 72394 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642783321 |
|---|
| Product | citrate lyase subunit alpha |
|---|
| Protein accession | YP_002214015 |
|---|
| Protein GI | 198246254 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3051] Citrate lyase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR01584] citrate lyase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.597387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAGA CTGTAACCAT GCTCAACCAG CAATATGTCG TACCGGAAGG ATTACAGCCC
TACCAGGGGG TAACAGCGAA CAGCCCGTGG CTTGCCAGTG AAACGGAAAA GCGTCGGCGT
AAAATTTGTG ACTCGCTTGA AGAGGCTATC CGTCGTTCCG GGCTTAAAAA TGGCATGACG
ATATCCTTCC ACCATGCGTT TCGTGGTGGC GACAAAGTCG TCAATATGGT GATGGCGAAG
CTGGCGGAAA TGGGATTCCG CGATCTGACG CTTGCCTCCA GCTCATTAAT TGATGTCCAC
TGGCCGCTTA TCGAACACAT TAAAAATGGC GTGGTGCGGC AGATTTACAC CTCCGGGCTG
CGCGGCAAGT TAGGGGAAGA GATCTCCGCT GGCCTGATGG AAAACCCGGT ACAGATCCAC
TCTCACGGCG GCCGCGTAAA GCTGATTCAG AGCGGTGAGC TGAATATTGA TGTCGCTTTC
CTCGGCGTGC CGTGCTGCGA TGAATTTGGT AATGCTAACG GCTTTAGCGG CAAGTCACGC
TGCGGCTCTT TGGGGTATGC GCAGGTTGAT GCGCAGTACG CTAAATGTGT GGTGCTCCTG
ACTGAAGAGT GGGTCGAATT CCCCAATTAT CCGGCCAGTA TCGCGCAGGA TCAGGTTGAT
TTGATCGTAC AGGTGGACGA AGTAGGGGAT CCGGAAAAAA TCACCGCGGG TGCGATTCGT
CTGTCCAGCA ACCCGCGTGA ACTGTTGATC GCCCGGCAGG CGGCCAATGT GATCGAACAC
TCAGGTTATT TTTGTGATGG TTTCTCGCTG CAAACTGGCA CCGGTGGCGC TTCTCTGGCG
GTCACCCGTT TCCTGGAAGA CAAAATGCGT CGCCACAACA TTACGGCGAG TTTTGGCCTG
GGCGGGATCA CCGGCACCAT GGTGGATCTG CATGAGAAAG GGTTGATCAA ATCGCTGCTG
GATACGCAAT CATTCGATGG CGATGCAGCC CGTTCACTGG CGCAGAATCC ACATCATATT
GAAATCTCAA CCAATCAATA CGCGAACCCC GTCTCTAAAG GCGCGGCATG CGAACGCCTG
AATGTGGTGA TGCTGAGCGC ACTGGAAATT GACGTGAATT TCAACGTTAA CGTGATGACA
GGTTCAAACG GCGTACTGCG TGGCGCATCG GGCGGCCATA GCGATACGGC AGCAGGGGCC
GATCTCACCA TTATTACCGC ACCGCTGGTC CGTGGCCGAA TCCCATGTGT GGTGGAAAAA
GTGCTGACTA CCGTCACGCC TGGGGCAAGT GTTGATGTGC TGGTTACCGA CCATGGTATT
GCGGTGAACC CTGCGCGTCA GGATCTGCTT GATAACCTGC GTGCTGCGGG TGTGGCGCTG
ATGACCATCG AACAACTGCA ACAGCGCGCT GAGCAACTGA CCGGTAAACC GCAGCCGATT
GAGTTTACCG ATCGGGTGGT GGCTGTGGTG CGTTATCGCG ACGGTTCAGT GATTGACGTG
ATTCGCCAGG TTAAAGGCTG A
|
|---|
| Protein sequence | MKETVTMLNQ QYVVPEGLQP YQGVTANSPW LASETEKRRR KICDSLEEAI RRSGLKNGMT
ISFHHAFRGG DKVVNMVMAK LAEMGFRDLT LASSSLIDVH WPLIEHIKNG VVRQIYTSGL
RGKLGEEISA GLMENPVQIH SHGGRVKLIQ SGELNIDVAF LGVPCCDEFG NANGFSGKSR
CGSLGYAQVD AQYAKCVVLL TEEWVEFPNY PASIAQDQVD LIVQVDEVGD PEKITAGAIR
LSSNPRELLI ARQAANVIEH SGYFCDGFSL QTGTGGASLA VTRFLEDKMR RHNITASFGL
GGITGTMVDL HEKGLIKSLL DTQSFDGDAA RSLAQNPHHI EISTNQYANP VSKGAACERL
NVVMLSALEI DVNFNVNVMT GSNGVLRGAS GGHSDTAAGA DLTIITAPLV RGRIPCVVEK
VLTTVTPGAS VDVLVTDHGI AVNPARQDLL DNLRAAGVAL MTIEQLQQRA EQLTGKPQPI
EFTDRVVAVV RYRDGSVIDV IRQVKG
|
|---|
| |