| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A0025 |
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| Symbol | |
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| ID | 6874880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 28427 |
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| End bp | 29434 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642783285 |
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| Product | mannose binding protein FimH |
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| Protein accession | YP_002213979 |
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| Protein GI | 198246163 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.159882 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 54 |
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| Fosmid unclonability p-value | 0.122652 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAC CTCTTTTATT TGCTCTGCTG GCGGGAAGTG TCGTATCGCA GTACGCCTTC
GCAGACGTGT GTAAAAACGT TAACGGCGTG CCTTCCAGTA TTAATTACGA TTTAACGACC
ACTCTGATGG CAGAACAAAA CCAGGTGGGA AAGACGGTTC AACTGGAAAA AAGCCAGGAA
GTTAATGTAC AGGCGGTGTG TCCCGCCGGC GCGTCGACCT ATAGCCAGAC TTATCGCTCC
TATGTGTCGC CATATCCGGT CGTAGAAACG AGCGGTAACT GGAAATATTT AAAGCTGGAC
CCGGACTACC TTGAAGGCGG AATGCGAATT GAGGATTCTT CGGCGGGCGA TATCTATCCG
CCAATGAACA ACGTTCTGAT GGGATATGAT GAAAATGTGA AAGCGGGTCA ACCGTTTTAC
GTTCGTGACT CAAATCTGGA GTTTCAGCTC AAAATTGTTA AACCGTTCGT CGGCACGGTG
AATATTAGTC CTAAGACTAT GTTCAATGTT TATGTCATGA CCGCCGCAGG CGATCCGCTG
ACAGATGTCG TATACAGCAT TCTTTATAGT GGAACGGTGA CCGTACCGCA AAGCTGTGAA
ATCAACGCCG GACAAACGAT TCTGGTAAAT TTCGGCGCAT TATACAGTGG CAATTTCAAC
CATGCAGGCC AAAAGCCGGA GGGGGTACGA GCGAAAAAAT TCAGCGTACC GGTAAAGTGC
AGCGGTCTGG ATTCGCAGGT CAATTTAACA ATGCGTCTTA TCGCTACGCC GGATAGCCAC
GTTCCCCAGG CTATCGCTTC GGATAATGCC GATGTCGGCG TAGTGGTCGA AACCGATGAA
GGAAACGCGC TTATCCCCAA TGATGCACAG AGCGTCGCGC CTTTTATCAC CGATAGCGCC
GGACGCGCTA ACATCACATT GCAAGCCTAC CCGGTAAGTA CAACAGGCGA AACGCCTGCG
GAAGGGGCGT TTACCGCACT GGCCAGCCTG CGAGTGGACT TTGACTAA
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| Protein sequence | MKIPLLFALL AGSVVSQYAF ADVCKNVNGV PSSINYDLTT TLMAEQNQVG KTVQLEKSQE
VNVQAVCPAG ASTYSQTYRS YVSPYPVVET SGNWKYLKLD PDYLEGGMRI EDSSAGDIYP
PMNNVLMGYD ENVKAGQPFY VRDSNLEFQL KIVKPFVGTV NISPKTMFNV YVMTAAGDPL
TDVVYSILYS GTVTVPQSCE INAGQTILVN FGALYSGNFN HAGQKPEGVR AKKFSVPVKC
SGLDSQVNLT MRLIATPDSH VPQAIASDNA DVGVVVETDE GNALIPNDAQ SVAPFITDSA
GRANITLQAY PVSTTGETPA EGAFTALASL RVDFD
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